Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1070
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024204-4|AAF36039.1|  126|Caenorhabditis elegans Hypothetical ...    31   0.42 
Z93388-1|CAB07658.1|  355|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF047655-9|AAC04395.1|  313|Caenorhabditis elegans Hypothetical ...    29   1.7  
AL021493-7|CAA16389.3|  345|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AC024204-4|AAF36039.1|  126|Caenorhabditis elegans Hypothetical
           protein Y73B6A.3 protein.
          Length = 126

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = -1

Query: 402 CQ*LNKTKCSFARHVR*MALTAPRKPLYNGNGHFTTARNTGLKHETRFRTPFTDTSDL 229
           C   NKTKC F  +V+      P K  YN   +    +         +RTP  DT DL
Sbjct: 65  CNGKNKTKCGFWENVKTKKKVEP-KTTYNKKKNLLIIQKVSALDAGTYRTPEYDTVDL 121


>Z93388-1|CAB07658.1|  355|Caenorhabditis elegans Hypothetical
           protein T10C6.1 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 220 QLAQITRVGKWRSKTGLVFQTCISCGCE 303
           QLA  T+V  W S  G+ F TCI  G E
Sbjct: 196 QLADGTKVINWDSFIGMAFSTCILFGSE 223


>AF047655-9|AAC04395.1|  313|Caenorhabditis elegans Hypothetical
           protein C17B7.11 protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +1

Query: 160 LLLLQS-SKRCFTTLATGN---TNQLAQITRVGKWRSKTGLVFQTCIS 291
           L++LQ  +++   T+   N   TNQLAQIT + +W  KT   F+ C S
Sbjct: 166 LIILQCLNEKTLETINLSNPSQTNQLAQITHLNQW--KTAKNFELCNS 211


>AL021493-7|CAA16389.3|  345|Caenorhabditis elegans Hypothetical
           protein Y51A2B.4 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 39  SRLTYHLKILAHYNKPCLCLKRSFLN 116
           +R+ + L    H N+P LCL  SF N
Sbjct: 37  ARVLFELVAAVHNNQPQLCLNSSFKN 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,184,166
Number of Sequences: 27780
Number of extensions: 223271
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)