Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1070
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ...    27   6.4  
At4g35770.1 68417.m05078 senescence-associated protein (SEN1) id...    27   6.4  

>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 324

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 9   VQKSHCGFDNSRLTYHLK--ILAHYNKPCL 92
           V  S  GF+NS + YH++  +++ +  PC+
Sbjct: 68  VSSSSFGFNNSHMAYHMRKNMVSTFGMPCI 97


>At4g35770.1 68417.m05078 senescence-associated protein (SEN1)
           identical to senescence-associated protein GI:1046270
           from [Arabidopsis thaliana]
          Length = 182

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 235 TRVGKWRSKTGLVFQTCISCGCEMP 309
           +R+G W S      QTC S  C++P
Sbjct: 10  SRIGNWSSAISPPLQTCGSFKCQLP 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,330,682
Number of Sequences: 28952
Number of extensions: 202597
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)