Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1069
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   0.95 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.9  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    20   8.9  

>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 425 VLREKGECPSPRPALRSRGRCGETCRLSEECSW 327
           VL+  G  P P P+    GRC    ++S    W
Sbjct: 49  VLQYPGCVPKPIPSFACIGRCASYIQVSGSKIW 81


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 167 FGLHVRVPDGDHRVLGEGGRVPQDRLRGARAST 265
           +G  V+VP G  R     G V   R   ARAS+
Sbjct: 30  YGAAVQVPQGGRRRAARPGVVTTPRWGCARASS 62


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 419 REKGECPSPR-PALRSRGRCGETC 351
           +++ +C   + P  R  GRC E C
Sbjct: 483 KQRQQCNQNKCPVKRGNGRCDEEC 506


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 118 MSLNSPLTTAVALNWGAGLVICR 50
           +S+++ +   + + W AG V+C+
Sbjct: 98  ISVSTDIAWRITVAWYAGNVLCK 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,404
Number of Sequences: 336
Number of extensions: 1353
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)