Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1069
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   102   2e-23
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   1.2  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   1.6  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   3.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   5.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   5.0  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   6.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    24   8.8  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    24   8.8  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  102 bits (245), Expect = 2e-23
 Identities = 46/70 (65%), Positives = 56/70 (80%)
 Frame = +3

Query: 45  MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 224
           M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 225 EFRKIGCEVL 254
           +F +   +V+
Sbjct: 61  KFAERNAQVI 70



 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 33/49 (67%), Positives = 44/49 (89%)
 Frame = +2

Query: 260 STDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGI 406
           STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+
Sbjct: 73  STDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGV 121


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
 Frame = +3

Query: 3   SVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLSDYKGKYVVLF 158
           S F+Y     SF++     T  +P+   TA+            FK    + YK      F
Sbjct: 36  SSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTTSYKD-----F 90

Query: 159 FYPLDFTFVCPTEIIAFSEKADEFRK 236
            +  D+T   PT  +  S+  DEF K
Sbjct: 91  VFSRDYTNWTPTFWVLLSQLIDEFLK 116


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 66  PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 197
           P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 417 GKRGMPVSSSSTP*SREMR*DLSLIRGMFMGPS 319
           G+RG+ V+ +    SR    D + +R M MGPS
Sbjct: 689 GRRGLDVTGTVIILSRSELPDTASLRHMIMGPS 721


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 21  SKVFSFNKMPLQMTKPAPQFKATAVVN 101
           S +FSFN      TKP+P   +T   N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 314 GGLGPMNIPLISDKS 358
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 89  RGLELGSGFGHLQRHLVETKD 27
           R L+LG+G GHL   L+E +D
Sbjct: 67  RVLDLGTGNGHLLFRLLEEED 87


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 338 PLISDKSHRISRD---YGVLDEETGIPLFPGGLFN 433
           P +SD+   I  +   Y V+D+  G+P+ P G +N
Sbjct: 98  PPVSDQPVGIVHEDESYVVIDKPAGVPVHPTGRYN 132


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -2

Query: 250  TSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 77
            TS  +L +S+  + + +++   T + S    N  T  P+ S   ++ ++P+T++ ALN
Sbjct: 1249 TSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 398 TGIPLFPGG 424
           TG+PLFPGG
Sbjct: 713 TGVPLFPGG 721


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 42  KMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFF 161
           K+ LQ+ KP   +    VV        LS+ + KYV L+F
Sbjct: 198 KLILQLQKPLKLYSLIKVVTYLRVTAKLSEAQLKYVFLYF 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,495
Number of Sequences: 5004
Number of extensions: 23663
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)