Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1069
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 89 2e-18
06_01_0671 - 4899611-4899829,4900870-4901448 47 6e-06
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 42 2e-04
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 41 5e-04
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 31 0.54
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 30 0.94
02_03_0183 + 16106205-16106474 29 1.2
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260... 28 3.8
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 27 6.6
06_01_0440 + 3127197-3127700,3128299-3128670 27 8.7
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 27 8.7
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 88.6 bits (210), Expect = 2e-18
Identities = 41/63 (65%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Frame = +3
Query: 69 APQFKATAVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 245
AP F A AV + EF ++ LSDY GK YV+LFFYPLDFTFVCPTEI AFS++ DEF K+
Sbjct: 74 APDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNT 133
Query: 246 EVL 254
E+L
Sbjct: 134 EIL 136
Score = 57.6 bits (133), Expect = 4e-09
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +2
Query: 275 FTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPLFPGGLF 430
F+HLAW+ T RK GGLG + PLISD + IS+ +GVL + GI L GLF
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIAL--RGLF 261
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +3
Query: 117 ISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 254
+SLS +KG+ VV++FYP D T C + AF + ++F+K G EV+
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVI 182
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 117 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 254
I + D+ G YV+LF +P DFT VC TE+ A + A EF K G ++L
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLL 103
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 40.7 bits (91), Expect = 5e-04
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 117 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 254
I L D+ G YV++F +P DFT VC TE+ + A EF K G ++L
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLL 68
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 30.7 bits (66), Expect = 0.54
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 180 FVCPTEIIAFSEKADEFRKIGCEVL 254
FV EI AFS++ +EF KI EVL
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVL 72
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 29.9 bits (64), Expect = 0.94
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 292 DQHAAQAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSPFSRRT 426
D H A++ R +P EH DK++ S + P + R D + + +R+
Sbjct: 184 DTHRAKSPRRQPKEHEVDKKRRS-YSPANKDGDRRDADNGYEKRS 227
>02_03_0183 + 16106205-16106474
Length = 89
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 338 PLISDKSHRISRDYGVLDEETGIPLFPG 421
PL S HR SR +G L E +G P+ G
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFPVAMG 86
>12_01_0340 -
2605770-2605916,2606353-2606595,2607260-2607531,
2607691-2607733,2607822-2607899,2608026-2608085,
2608272-2608331,2609440-2609577,2609655-2609767,
2610333-2610569,2610867-2610918
Length = 480
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 170 GLHVRVPDGDHRVLGEGGRVPQD---RLRGARASTD 268
GLH +PDGD R + + D RLR A A D
Sbjct: 286 GLHAHLPDGDLRAIVDDALAHYDELFRLRAAAAKAD 321
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 305 RKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIP 409
+K+ G G N+P D R ++DY +DE+ +P
Sbjct: 65 KKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVP 99
>06_01_0440 + 3127197-3127700,3128299-3128670
Length = 291
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 242 LRGARASTDSHFTHLAW 292
+R RASTD F H+AW
Sbjct: 180 VRAERASTDGTFPHVAW 196
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +3
Query: 93 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 236
++N + K ++ D+ GK+ +L+F +CP E+ + D+ ++
Sbjct: 187 LLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKE 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,233,455
Number of Sequences: 37544
Number of extensions: 185003
Number of successful extensions: 715
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -