Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1069
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   109   7e-25
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   4e-24
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              54   4e-08
SB_38812| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.41 
SB_36630| Best HMM Match : DUF1312 (HMM E-Value=0.67)                  31   0.41 
SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)                 27   6.7  
SB_8778| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_27396| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3)                 27   6.7  
SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)                 27   8.8  
SB_26752| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)                    27   8.8  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  109 bits (263), Expect = 7e-25
 Identities = 52/81 (64%), Positives = 63/81 (77%), Gaps = 4/81 (4%)
 Frame = +3

Query: 24  KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 191
           ++ SF++  +  T   KPAP F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39  RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98

Query: 192 TEIIAFSEKADEFRKIGCEVL 254
           TEIIAFS++ DEF+ I CEV+
Sbjct: 99  TEIIAFSDRVDEFKAINCEVI 119



 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 32/57 (56%), Positives = 44/57 (77%)
 Frame = +2

Query: 260 STDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPLFPGGLF 430
           S DS ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ L   GLF
Sbjct: 122 SVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVAL--RGLF 176


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  107 bits (257), Expect = 4e-24
 Identities = 46/67 (68%), Positives = 59/67 (88%)
 Frame = +3

Query: 54  QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 233
           Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 234 KIGCEVL 254
            I  EV+
Sbjct: 115 AINTEVV 121


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 25/45 (55%), Positives = 35/45 (77%)
 Frame = +2

Query: 296 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPLFPGGLF 430
           N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ L   GLF
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVAL--RGLF 45


>SB_38812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 131 LQGEICCAVLLSFGLHVRVPDGDHRVLGEGGRVPQDRLRGARASTDSHFTH 283
           L+ ++    L    +H   P+ D  V  +GGR+P+ +L  ++   D ++ H
Sbjct: 20  LERKVTVIRLAESKIHNHKPEHDIDVHSQGGRLPKTKLHASKEQMDDYYRH 70


>SB_36630| Best HMM Match : DUF1312 (HMM E-Value=0.67)
          Length = 241

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 131 LQGEICCAVLLSFGLHVRVPDGDHRVLGEGGRVPQDRLRGARASTDSHFTH 283
           L+ ++    L    +H   P+ D  V  +GGR+P+ +L  ++   D ++ H
Sbjct: 167 LERKVTVIRLAESKIHNHKPEHDIDVHSQGGRLPKTKLHASKEQMDDYYRH 217


>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 140 EICCAVLLSFGLHVRVPDGDHRVLGEGGRVPQDRLRGA 253
           + CC V  +FG        DHR+LG       D   GA
Sbjct: 475 DFCCTVKAAFGYKKNATTKDHRMLGTNNVASNDYTTGA 512


>SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 307 QAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSP 411
           Q GR RP++H      V  H PR R   R    SP
Sbjct: 147 QTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSP 181


>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 158 LLSFGLHVRVPDGDHRVLGEGGRVPQDRLRGARASTDSHFTHLAWINTPR 307
           L S  L  R  DG   +  E    P+      RA+T+S  T L W+++ R
Sbjct: 6   LASSSLSGRTWDGSVWIFREPSTAPEVEYSCGRAATESGVTDLKWLDSKR 55


>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
          Length = 754

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 24  KVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 143
           K FSF   P  + +P P+ K    V  + + ISL+    K
Sbjct: 321 KTFSFELAPSAIARPLPKSKHAKTVENDVRLISLTSQVAK 360


>SB_8778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 307 QAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSP 411
           + GR RP++H      V  H PR R   R    SP
Sbjct: 37  ETGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSP 71


>SB_27396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 307 QAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSP 411
           + GR RP++H      V  H PR R   R    SP
Sbjct: 37  ETGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSP 71


>SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3)
          Length = 237

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 307 QAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSP 411
           + GR RP++H      V  H PR R   R    SP
Sbjct: 99  ETGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSP 133


>SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)
          Length = 810

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 159 FYPLDFTFVCPTEIIAFSEKADEF 230
           F P+    VCPT+ +AF++  D F
Sbjct: 400 FPPIQEDTVCPTQRVAFADHVDTF 423


>SB_26752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 307 QAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSP 411
           + GR RP++H      V  H PR R   R    SP
Sbjct: 9   KTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSP 43


>SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 307 QAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSP 411
           + GR RP++H      V  H PR R   R    SP
Sbjct: 43  KTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSP 77


>SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 307 QAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSP 411
           + GR RP++H      V  H PR R   R    SP
Sbjct: 43  KTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSP 77


>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
          Length = 187

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 307 QAGRTRPHEHSSDKRQVSPHLPRLRSAGRGDGHSP 411
           + GR RP++H      V  H PR R   R    SP
Sbjct: 31  KTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSP 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,370
Number of Sequences: 59808
Number of extensions: 189751
Number of successful extensions: 751
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)