Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1068
         (444 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   2.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   4.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   5.2  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   6.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   9.2  

>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 82  LQRDDAAALRGGGPRPDRATSCRGAVLVLVLEHEPALGGQ 201
           L RD    L GG   PD  +       +++  H P + GQ
Sbjct: 124 LVRDGKPCLSGGPKHPDPGSLQVPGAPMMMSSHGPLMYGQ 163


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -3

Query: 364 KWCRRAGGRCW 332
           +WC +  G CW
Sbjct: 583 RWCYQNEGECW 593


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 122 GPPPRSAAASSRCRWTCRADASC 54
           G PP+  +  S+ R+T RA   C
Sbjct: 271 GLPPQVPSPRSQRRYTGRATCDC 293


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 149 RHDVARSGRGPPPRSAAASSRC 84
           RH          PR+  ASSRC
Sbjct: 281 RHTTTSHNTRGTPRTTPASSRC 302


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 77  TCRADASCRSHSRIP 33
           +C AD SC S  + P
Sbjct: 115 SCHADKSCASDDKSP 129


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 385  RDKSSGGKWCRRAGGRCWWTSRSSLRDRRGC 293
            R KS   K  +  GG  W       ++R GC
Sbjct: 2644 RRKSRLVKALKLGGGMVWALDLDDFKNRCGC 2674


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,670
Number of Sequences: 336
Number of extensions: 862
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)