Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1068
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    24   9.1  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.1  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 116 PPRSAAASSRCRWTCRADAS 57
           PP+SA+ASS   W C A  S
Sbjct: 186 PPKSASASSVIVWVCGAKKS 205


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 149 RHDVARSGRGPPPRSAAASSRCRWTCRADASCRSH 45
           RH      R PP  S  + SR R+  R+  S R+H
Sbjct: 168 RHRYDDYSRSPPYSSRHSRSRRRYEERSSRSSRAH 202


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 337 CWWTSRSSLR 308
           CWWTS+ S R
Sbjct: 167 CWWTSKESAR 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 961,506
Number of Sequences: 5004
Number of extensions: 11822
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)