Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1068
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047 28 2.9
06_01_0302 + 2188905-2188989,2189309-2189406,2189487-2189753,218... 28 3.9
02_02_0558 + 11477433-11477525,11477632-11477973,11481854-114823... 28 3.9
01_06_1311 - 36181961-36182519,36182547-36182605 27 5.1
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175... 27 6.8
07_03_0142 - 14251959-14252230,14252244-14252316 27 6.8
06_03_0176 - 17575155-17575761,17575935-17575972 27 6.8
05_03_0217 + 10401876-10401948,10401962-10402233 27 6.8
01_07_0265 + 42404297-42404479,42404544-42404723,42404811-42405440 27 6.8
01_07_0139 - 41385823-41386656 27 6.8
10_01_0263 - 2759479-2759534,2761002-2761299,2761382-2762134 27 9.0
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 27 9.0
04_01_0498 - 6525263-6525616 27 9.0
>12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047
Length = 162
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 100 AALRGGGPRPDRATSCRGAVLVLVLEHEPALGG 198
A + G + ATSC G V V V E E +LGG
Sbjct: 8 AGVSGLAAAHELATSCAGGVDVTVYEKEDSLGG 40
>06_01_0302 +
2188905-2188989,2189309-2189406,2189487-2189753,
2189906-2189947,2190071-2190078,2190230-2190273,
2190615-2190695,2190779-2190907,2191017-2191114,
2191188-2191448,2191537-2191581,2191748-2191881,
2191965-2192045,2192127-2192308,2192632-2192746,
2192873-2193056,2193144-2193329
Length = 679
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -3
Query: 349 AGGRCWWTSRSSLRDRRGCWSV---RWCR 272
A G C+W ++++ WSV RWCR
Sbjct: 440 ASGACFWKMPRDVKNKVNRWSVPKPRWCR 468
>02_02_0558 +
11477433-11477525,11477632-11477973,11481854-11482381,
11482459-11482956
Length = 486
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 61 ASALQVHLQRDDAAALRGGGPRP-DRATSCRGAVLVLVLEHEPALGGQRPAS 213
A+ +V DAA +GGG + + A VL+LEH PA GG P++
Sbjct: 16 AAVRKVFRPSKDAADKKGGGGGDREEEAAAEAAPEVLLLEHFPA-GGTSPSA 66
>01_06_1311 - 36181961-36182519,36182547-36182605
Length = 205
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 137 ARSGRGPPPRSAAASSRCR 81
A SG GPPP S AA++R R
Sbjct: 80 AASGAGPPPSSPAAAARKR 98
>10_01_0152 -
1754113-1754286,1754396-1754551,1755273-1756194,
1756364-1756414,1757540-1757946,1758918-1759067,
1759178-1759333,1760175-1761041
Length = 960
Score = 27.1 bits (57), Expect = 6.8
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 79 HLQRDDAAALRGGGPRPDRATSCRGAVLVLVLEHEPALGGQR 204
HL DDAA +R G D RG+V V P +GG+R
Sbjct: 412 HLLEDDAAVVRAG----DDGVFVRGSVHEGVTAVAPVVGGRR 449
>07_03_0142 - 14251959-14252230,14252244-14252316
Length = 114
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 364 KWCRRAGGRCWWTSRSSLRDRRGCWSVR 281
+W R AG R W R S R RRG S R
Sbjct: 8 RWMRMAGRRRWLKRRRSGRCRRGLRSWR 35
>06_03_0176 - 17575155-17575761,17575935-17575972
Length = 214
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 379 KSSGGKWCRRAGGRCWWTSRSSLRDRR 299
+ GG+ RR WW+SR + RR
Sbjct: 80 RGRGGRGARRGPATRWWSSRRATTSRR 106
>05_03_0217 + 10401876-10401948,10401962-10402233
Length = 114
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 364 KWCRRAGGRCWWTSRSSLRDRRGCWSVR 281
+W R AG R W R S R RRG S R
Sbjct: 8 RWMRMAGRRRWLKRRRSGRCRRGLRSRR 35
>01_07_0265 + 42404297-42404479,42404544-42404723,42404811-42405440
Length = 330
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 82 LQRDDAAALRGGGPRPDRATSCRGAVLVLVL 174
L+ + AAALRGG RP A+S AV++L L
Sbjct: 259 LREEAAAALRGGSGRP--ASSSSDAVVLLSL 287
>01_07_0139 - 41385823-41386656
Length = 277
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Frame = -3
Query: 400 SRDAKRDKSSGGKWCRRAGGRC-WWTSRSSLRDRRGCWSVRWCRSS 266
SR R WCR A C W +S R R W R S
Sbjct: 225 SRSRGRSARGSPSWCRSAAATCSWCLGCTSARGRGSPWRTSGRRPS 270
>10_01_0263 - 2759479-2759534,2761002-2761299,2761382-2762134
Length = 368
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 149 RHDVARSGRGPPPRSAAASSR---CRWTCRADASCRSHSRIPWLML 21
RH AR G+G P R AA++R W A + S W++L
Sbjct: 227 RHPRARHGQGDPRRGRAAAARRSGSLWAREAGGADGVASTSSWVLL 272
>06_01_0090 -
724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 364 KWCRRAGGRCWWTSRSSLRDRR 299
KWCR G R WTS ++ R
Sbjct: 337 KWCRYLGKRVAWTSLEAVNKNR 358
>04_01_0498 - 6525263-6525616
Length = 117
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 376 SSGGKWCRRAGGRCWWTSRSSLRDRRGC 293
+SG C GGR WW RRGC
Sbjct: 2 ASGAGMC--GGGRGWWLGGVGAGGRRGC 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,513,022
Number of Sequences: 37544
Number of extensions: 135444
Number of successful extensions: 709
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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