Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1067
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    27   1.6  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   6.6  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    25   6.6  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   8.7  

>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 25  WRTPRSYVQRLCFIFKGSHKKDA 93
           W  P  +V R+C   KG  KKDA
Sbjct: 117 WVLPHQFVVRICNQLKGCLKKDA 139


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 68  SRVVIKKMPDSLFFTCVSKSLVL 136
           S+ ++KK PD+L F  V++++ L
Sbjct: 72  SQTIVKKNPDNLIFVAVNQNVQL 94


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 54  PLDVASRCPPKSPLKK 7
           PL V+ R PPK PL+K
Sbjct: 298 PLHVSPRKPPKPPLRK 313


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 230 NIRLDQSPMLCKVSFFCASKALQTLLW 310
           N + DQ PM     F  + + LQTL W
Sbjct: 61  NYKYDQVPMYSICVFCLSGQLLQTLTW 87


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 14  SGLFGGHREATSSGFVSFSRVVIK 85
           SGL G H EA   G  S+ + +++
Sbjct: 387 SGLLGPHSEAEGQGMESYQKAIME 410


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 12   SVDFLEDTEKLRPAALFHFQG 74
            S  FLE  E +RP A+F  +G
Sbjct: 1021 SFRFLEKREDIRPIAMFRLRG 1041


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,182
Number of Sequences: 5004
Number of extensions: 30668
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)