Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1067
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511...    29   1.6  
04_04_0316 - 24338774-24339367                                         29   1.6  
12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488...    28   2.8  
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166...    27   8.5  

>08_01_0576 -
           5114636-5115151,5115254-5116183,5116898-5117614,
           5119630-5119746,5119930-5120295,5121365-5121634
          Length = 971

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 100 ALLHMRFKIPCSVEIL*LRARPGQTLPELTSKNPPKDQ 213
           ALL   F +P +V    L++ PG  LP L S  PP  Q
Sbjct: 727 ALLPSSFPVPPAVPPYGLQSMPGFPLPSLPSGPPPPSQ 764


>04_04_0316 - 24338774-24339367
          Length = 197

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 SVEIL*LRARPGQTLPELTSKNPPKDQRITNSKYTS 240
           SV +L  RARP Q LPE   +NPP  +   +S  +S
Sbjct: 97  SVRVLPWRARPQQPLPE--EQNPPPQETSASSSSSS 130


>12_01_1054 +
           10847342-10847543,10847627-10847962,10848557-10848807,
           10849226-10849313,10849548-10849723,10850597-10850656,
           10850811-10850901,10851563-10851639,10852565-10852653,
           10852950-10853061,10853623-10853725,10854892-10855121
          Length = 604

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 415 GN*LPSHCRQLEHHHDTQFKPVSFG 341
           G+ LP  CR+L  H +TQ  PV  G
Sbjct: 505 GDELPEKCRELAIHFETQGTPVMIG 529


>01_06_1691 -
           39215192-39215283,39215341-39215413,39215874-39216615,
           39216730-39217985,39218080-39218187,39218289-39218474,
           39218625-39218675
          Length = 835

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 336 YLL*NLFNYQSSVCSALDAQKNETLHNI 253
           Y L NL N+Q+SV S L A   E LH++
Sbjct: 610 YTLYNLSNHQASVPSLLSAGIVEALHSL 637


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,417,823
Number of Sequences: 37544
Number of extensions: 177945
Number of successful extensions: 348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)