Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1067
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)                28   3.8  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  27   8.7  
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)                 27   8.7  

>SB_24263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 120 ETHVKKSESGIFFMTTLENETKPLDVASRCPPKSPLKKS 4
           ETH+ +S SGI      + ETKP+D+   C  +  ++++
Sbjct: 93  ETHLSES-SGIRDSEKTQTETKPMDLEDACGEQDKMEET 130


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 174 SLARSCT*LENLDRTRDFETHVKKSE 97
           +LA  CT +EN DRT+   THV++ +
Sbjct: 897 ALAIKCTKIENRDRTQTPTTHVQQGD 922


>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
          Length = 617

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 43  YVQRLCFIFKGSHKKDARFALLHMRFKIPCSV 138
           Y + LC ++ G H KD     LH  FK  C V
Sbjct: 586 YSKLLCQVYAGVHGKDVDDPDLHQFFKFKCWV 617


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 117  THVKKSESGIFFMTTLENETKPLDVASRCPPKSP 16
            TH+ ++E  +F  TTLE  ++    + R  P+ P
Sbjct: 2629 THLNQTEHALFIQTTLERCSQDTTWSRRFKPRRP 2662


>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
          Length = 191

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 160 RPGQTLPELTSKNP-PKDQRITNSK 231
           + G+TLPE+  K+P PK ++ T  K
Sbjct: 142 KTGETLPEIEDKDPMPKPKKTTTKK 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,326,101
Number of Sequences: 59808
Number of extensions: 222404
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)