Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1067
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical ...    29   1.1  
AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.      29   1.1  

>AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical
           protein Y18D10A.5 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 208 DQRITNSKYTSRSVSNVM*GFIFLRI*GTTNAALVVKEVLK 330
           DQ++  S Y  + + N   G +FL    TTN  + +K+VL+
Sbjct: 29  DQQVEISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQ 69


>AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 208 DQRITNSKYTSRSVSNVM*GFIFLRI*GTTNAALVVKEVLK 330
           DQ++  S Y  + + N   G +FL    TTN  + +K+VL+
Sbjct: 29  DQQVEISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQ 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,305,553
Number of Sequences: 27780
Number of extensions: 170840
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)