Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1067
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   2.5  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   4.4  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   4.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 333 LL*NLFNYQSSVCSALDAQKNETL 262
           +L NL+    S C  LD  K ET+
Sbjct: 515 MLQNLYEQFDSFCGQLDVYKVETI 538


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 51  LDVASRCPPKSPLKKSQ 1
           +DV  RCPP S   K++
Sbjct: 55  IDVPPRCPPGSKFIKNR 71


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 51  LDVASRCPPKSPLKKSQ 1
           +DV  RCPP S   K++
Sbjct: 55  IDVPPRCPPGSKFIKNR 71


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 160 RPGQTLPELTSKNPPKDQRITNSKYT 237
           RP     EL + N P   R  N  YT
Sbjct: 8   RPSYCTWELNATNSPHTCRTKNGDYT 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,878
Number of Sequences: 438
Number of extensions: 2177
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)