Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1066
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 99 2e-22
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.32
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 0.73
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 28 0.73
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 1.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 1.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 1.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 1.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 1.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 2.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.0
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 3.9
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 5.2
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 5.2
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 5.2
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 6.8
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 25 6.8
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 9.0
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 99 bits (238), Expect = 2e-22
Identities = 42/77 (54%), Positives = 59/77 (76%)
Frame = +1
Query: 268 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 447
S ++LK L E IP++Q +I++FR +HG +GEVT++ MYGG RG++ L+WE SVLD
Sbjct: 36 STRSSSLKDRLAELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLD 95
Query: 448 ADEGIRFRGLSIPECQQ 498
+EGIRFRG +IPECQ+
Sbjct: 96 PNEGIRFRGYTIPECQK 112
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 29.5 bits (63), Expect = 0.32
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 211 KTRRIAESMSDCDSSLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHG 357
+TR +E ++ AEQ I KIP E K+RE+ +++G
Sbjct: 13 ETRPFSEGITRFTKEQAAYYAEQKEKDRIKALKIPYEDSKVREYLRRYG 61
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 256 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 378
LR L E NL+ + ++ +EQE+ + +++ S+K+ E+
Sbjct: 123 LRALQEESANLRRQRENRLREEQEQSKRRKQETPSSKISEL 163
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 358 NHASFGIRGSSLVLWESFPGEYFLNSSVQRLDLEV 254
N+ S G+RG ++ L+ +PG SV L++++
Sbjct: 594 NYDSLGVRGLNMELFNDYPGNMHNIKSVLSLEIDI 628
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
S +G + Q N+ +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 235 MSDCDSSLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 375
+S + L+G E+ I E + +E++ FRK+ S++ E
Sbjct: 429 LSSIMAGLKGREKEKDKDSGISSENVSNNREELPSFRKRSSSSRQSE 475
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 458 PSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 354
P S+ VS TRP IP+ PP + +S + P
Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +2
Query: 314 PKNKRRSANSERSMVPLKSERSQLI*CTVACVESKVWFGKPLCWMPMKESVSVVYPSLSA 493
P+NKR + +R+++ L + ++ V F L W+P + SV ++SA
Sbjct: 467 PQNKRLLRSFDRTLLILPGGSTGILIINDLLVIRS--FAGSLGWLPGQSSVRTSNNAMSA 524
Query: 494 NKAKPA 511
+ +KP+
Sbjct: 525 SASKPS 530
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 241 DCDSSLRG--LSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 366
D + +L G ++ E ++ I+Q K KE++KIR GS+K
Sbjct: 343 DRNRTLEGDLVAVELLDVNEIMQTKREKEEKKIRRNLSLSGSSK 386
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 479 DRP--RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 354
DRP R + PSSA+ T PL + PY+ S SPT++ P
Sbjct: 55 DRPNMRGKKPSSAART----LSPLTGIVQPYLGSHPFSPTILSP 94
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 241 DCDSSLRGLSAEQTNLKSILQEKIPKEQEKIRE 339
DC RGL E++ ++SI + + Q K+ E
Sbjct: 39 DCSGQHRGLGVEKSFVRSITMDNWSERQVKMME 71
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 262 GLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTV 384
GL E+T+ + +EK+ KE E+ + K KV +V V
Sbjct: 523 GLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVV 563
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 207 DVILNRAIFKAAERKLPHKSR-QLARDRS 124
D LN+ ++K R +PH+ R +L+R RS
Sbjct: 57 DPSLNKEVWKRGIRNVPHRLRLRLSRKRS 85
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 301 QEKIPKEQEKIREFRKKH 354
+E IPK++ E RKKH
Sbjct: 252 EENIPKKKPDFNELRKKH 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,135
Number of Sequences: 5004
Number of extensions: 39884
Number of successful extensions: 177
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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