BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1066 (522 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 99 2e-22 SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.32 SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 0.73 SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 28 0.73 SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 1.7 SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 1.7 SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.7 SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.7 SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.7 SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.7 SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 1.7 SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.7 SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 1.7 SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.7 SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 1.7 SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 2.2 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.0 SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 3.9 SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 5.2 SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 5.2 SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 5.2 SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 6.8 SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 25 6.8 SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 9.0 >SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr 1|||Manual Length = 473 Score = 99 bits (238), Expect = 2e-22 Identities = 42/77 (54%), Positives = 59/77 (76%) Frame = +1 Query: 268 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 447 S ++LK L E IP++Q +I++FR +HG +GEVT++ MYGG RG++ L+WE SVLD Sbjct: 36 STRSSSLKDRLAELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLD 95 Query: 448 ADEGIRFRGLSIPECQQ 498 +EGIRFRG +IPECQ+ Sbjct: 96 PNEGIRFRGYTIPECQK 112 >SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 462 Score = 29.5 bits (63), Expect = 0.32 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +1 Query: 211 KTRRIAESMSDCDSSLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHG 357 +TR +E ++ AEQ I KIP E K+RE+ +++G Sbjct: 13 ETRPFSEGITRFTKEQAAYYAEQKEKDRIKALKIPYEDSKVREYLRRYG 61 >SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schizosaccharomyces pombe|chr 3|||Manual Length = 289 Score = 28.3 bits (60), Expect = 0.73 Identities = 12/41 (29%), Positives = 25/41 (60%) Frame = +1 Query: 256 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 378 LR L E NL+ + ++ +EQE+ + +++ S+K+ E+ Sbjct: 123 LRALQEESANLRRQRENRLREEQEQSKRRKQETPSSKISEL 163 >SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosaccharomyces pombe|chr 2|||Manual Length = 652 Score = 28.3 bits (60), Expect = 0.73 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -3 Query: 358 NHASFGIRGSSLVLWESFPGEYFLNSSVQRLDLEV 254 N+ S G+RG ++ L+ +PG SV L++++ Sbjct: 594 NYDSLGVRGLNMELFNDYPGNMHNIKSVLSLEIDI 628 >SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces pombe|chr 3|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 27.1 bits (57), Expect = 1.7 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342 S +G + Q N+ +LQ K PK ++++R+F Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645 >SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 710 Score = 26.6 bits (56), Expect = 2.2 Identities = 12/47 (25%), Positives = 23/47 (48%) Frame = +1 Query: 235 MSDCDSSLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 375 +S + L+G E+ I E + +E++ FRK+ S++ E Sbjct: 429 LSSIMAGLKGREKEKDKDSGISSENVSNNREELPSFRKRSSSSRQSE 475 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 26.2 bits (55), Expect = 3.0 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 Query: 458 PSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 354 P S+ VS TRP IP+ PP + +S + P Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090 >SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces pombe|chr 2|||Manual Length = 596 Score = 25.8 bits (54), Expect = 3.9 Identities = 17/66 (25%), Positives = 33/66 (50%) Frame = +2 Query: 314 PKNKRRSANSERSMVPLKSERSQLI*CTVACVESKVWFGKPLCWMPMKESVSVVYPSLSA 493 P+NKR + +R+++ L + ++ V F L W+P + SV ++SA Sbjct: 467 PQNKRLLRSFDRTLLILPGGSTGILIINDLLVIRS--FAGSLGWLPGQSSVRTSNNAMSA 524 Query: 494 NKAKPA 511 + +KP+ Sbjct: 525 SASKPS 530 >SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2|||Manual Length = 1157 Score = 25.4 bits (53), Expect = 5.2 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +1 Query: 241 DCDSSLRG--LSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 366 D + +L G ++ E ++ I+Q K KE++KIR GS+K Sbjct: 343 DRNRTLEGDLVAVELLDVNEIMQTKREKEEKKIRRNLSLSGSSK 386 >SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 697 Score = 25.4 bits (53), Expect = 5.2 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -2 Query: 479 DRP--RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 354 DRP R + PSSA+ T PL + PY+ S SPT++ P Sbjct: 55 DRPNMRGKKPSSAART----LSPLTGIVQPYLGSHPFSPTILSP 94 >SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 309 Score = 25.4 bits (53), Expect = 5.2 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +1 Query: 241 DCDSSLRGLSAEQTNLKSILQEKIPKEQEKIRE 339 DC RGL E++ ++SI + + Q K+ E Sbjct: 39 DCSGQHRGLGVEKSFVRSITMDNWSERQVKMME 71 >SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 25.0 bits (52), Expect = 6.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 262 GLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTV 384 GL E+T+ + +EK+ KE E+ + K KV +V V Sbjct: 523 GLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVV 563 >SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces pombe|chr 1|||Manual Length = 113 Score = 25.0 bits (52), Expect = 6.8 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 207 DVILNRAIFKAAERKLPHKSR-QLARDRS 124 D LN+ ++K R +PH+ R +L+R RS Sbjct: 57 DPSLNKEVWKRGIRNVPHRLRLRLSRKRS 85 >SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schizosaccharomyces pombe|chr 1|||Manual Length = 310 Score = 24.6 bits (51), Expect = 9.0 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 301 QEKIPKEQEKIREFRKKH 354 +E IPK++ E RKKH Sbjct: 252 EENIPKKKPDFNELRKKH 269 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,047,135 Number of Sequences: 5004 Number of extensions: 39884 Number of successful extensions: 177 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 177 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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