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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1066
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    99   2e-22
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    29   0.32 
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    28   0.73 
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    28   0.73 
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    27   1.7  
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    27   1.7  
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    27   1.7  
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...    27   1.7  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    27   1.7  
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...    27   1.7  
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    27   1.7  
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...    27   1.7  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    27   1.7  
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...    27   1.7  
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    27   1.7  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   2.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   3.0  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   3.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   5.2  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   5.2  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   6.8  
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    25   6.8  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    25   9.0  

>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score =   99 bits (238), Expect = 2e-22
 Identities = 42/77 (54%), Positives = 59/77 (76%)
 Frame = +1

Query: 268 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 447
           S   ++LK  L E IP++Q +I++FR +HG   +GEVT++ MYGG RG++ L+WE SVLD
Sbjct: 36  STRSSSLKDRLAELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLD 95

Query: 448 ADEGIRFRGLSIPECQQ 498
            +EGIRFRG +IPECQ+
Sbjct: 96  PNEGIRFRGYTIPECQK 112


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 211 KTRRIAESMSDCDSSLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHG 357
           +TR  +E ++          AEQ     I   KIP E  K+RE+ +++G
Sbjct: 13  ETRPFSEGITRFTKEQAAYYAEQKEKDRIKALKIPYEDSKVREYLRRYG 61


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 256 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 378
           LR L  E  NL+   + ++ +EQE+ +  +++  S+K+ E+
Sbjct: 123 LRALQEESANLRRQRENRLREEQEQSKRRKQETPSSKISEL 163


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 358 NHASFGIRGSSLVLWESFPGEYFLNSSVQRLDLEV 254
           N+ S G+RG ++ L+  +PG      SV  L++++
Sbjct: 594 NYDSLGVRGLNMELFNDYPGNMHNIKSVLSLEIDI 628


>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 SLRGLSAEQTNLKSILQEKIPKEQEKIREF 342
           S +G +  Q N+  +LQ K PK ++++R+F
Sbjct: 616 SEKGFTPCQENIDKVLQWKQPKNRKELRQF 645


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 235 MSDCDSSLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 375
           +S   + L+G   E+     I  E +   +E++  FRK+  S++  E
Sbjct: 429 LSSIMAGLKGREKEKDKDSGISSENVSNNREELPSFRKRSSSSRQSE 475


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 458  PSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 354
            P S+    VS TRP IP+ PP   +  +S  +  P
Sbjct: 1056 PVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRP 1090


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 314 PKNKRRSANSERSMVPLKSERSQLI*CTVACVESKVWFGKPLCWMPMKESVSVVYPSLSA 493
           P+NKR   + +R+++ L    + ++      V     F   L W+P + SV     ++SA
Sbjct: 467 PQNKRLLRSFDRTLLILPGGSTGILIINDLLVIRS--FAGSLGWLPGQSSVRTSNNAMSA 524

Query: 494 NKAKPA 511
           + +KP+
Sbjct: 525 SASKPS 530


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 241 DCDSSLRG--LSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTK 366
           D + +L G  ++ E  ++  I+Q K  KE++KIR      GS+K
Sbjct: 343 DRNRTLEGDLVAVELLDVNEIMQTKREKEEKKIRRNLSLSGSSK 386


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 479 DRP--RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 354
           DRP  R + PSSA+ T      PL   + PY+ S   SPT++ P
Sbjct: 55  DRPNMRGKKPSSAART----LSPLTGIVQPYLGSHPFSPTILSP 94


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 241 DCDSSLRGLSAEQTNLKSILQEKIPKEQEKIRE 339
           DC    RGL  E++ ++SI  +   + Q K+ E
Sbjct: 39  DCSGQHRGLGVEKSFVRSITMDNWSERQVKMME 71


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 262 GLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTV 384
           GL  E+T+ +   +EK+ KE E+  +  K     KV +V V
Sbjct: 523 GLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVV 563


>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 207 DVILNRAIFKAAERKLPHKSR-QLARDRS 124
           D  LN+ ++K   R +PH+ R +L+R RS
Sbjct: 57  DPSLNKEVWKRGIRNVPHRLRLRLSRKRS 85


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 301 QEKIPKEQEKIREFRKKH 354
           +E IPK++    E RKKH
Sbjct: 252 EENIPKKKPDFNELRKKH 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,135
Number of Sequences: 5004
Number of extensions: 39884
Number of successful extensions: 177
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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