Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1066
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 108 2e-24
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 104 5e-23
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 31 0.56
06_03_0159 - 17358853-17360781 30 0.98
07_03_0266 - 16015949-16016524,16016746-16016782,16017274-160178... 29 1.7
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 3.0
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 29 3.0
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 4.0
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 28 4.0
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 4.0
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 5.2
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 28 5.2
02_04_0088 + 19633641-19634228 28 5.2
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 5.2
06_01_0612 - 4429605-4431152 27 6.9
04_02_0012 + 8537124-8537464,8537558-8537693,8538811-8538861,854... 27 6.9
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 27 6.9
11_06_0577 - 25158833-25162864 27 9.1
11_04_0377 + 16977586-16977843 27 9.1
07_01_1124 + 10392909-10392974,10393037-10393455,10393503-103936... 27 9.1
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 27 9.1
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545... 27 9.1
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 27 9.1
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 108 bits (260), Expect = 2e-24
Identities = 45/77 (58%), Positives = 64/77 (83%)
Frame = +1
Query: 268 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 447
SA +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLD 93
Query: 448 ADEGIRFRGLSIPECQQ 498
DEGIRFRGLSIPECQ+
Sbjct: 94 PDEGIRFRGLSIPECQK 110
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 104 bits (249), Expect = 5e-23
Identities = 43/77 (55%), Positives = 63/77 (81%)
Frame = +1
Query: 268 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 447
S +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLD 93
Query: 448 ADEGIRFRGLSIPECQQ 498
+EGIRFRGLSIPECQ+
Sbjct: 94 PEEGIRFRGLSIPECQK 110
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 31.1 bits (67), Expect = 0.56
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 222 NCRKHVRLRQFTSRSKR-*TDEFKKYSPGKDSQRTREDPRIPKEAWFH*SRRGHS 383
NC HV L + SRSKR TD+ YS K ++ R P + H S G+S
Sbjct: 138 NCTLHVDLAKSNSRSKRSRTDDVPSYSSEKKARNPRGFPDSGAGSNIHMSGMGNS 192
>06_03_0159 - 17358853-17360781
Length = 642
Score = 30.3 bits (65), Expect = 0.98
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 371 PTLVEPCFFRNSRIFSCSLG--IFSWRILFKFVCSALRPRSELSQSDMLSAIL 219
P L+ P F R+ R F L + S+ +L K VCS+L PR D+ IL
Sbjct: 144 PHLLPPFFSRSLRRFPGRLAPTLLSFNLLLKCVCSSLVPRDPGRYLDVALRIL 196
>07_03_0266 -
16015949-16016524,16016746-16016782,16017274-16017884,
16018004-16018081,16018117-16018143
Length = 442
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 511 GGFGLVGTQGWIDHGNGF-LHRH 446
GGFGL+ +GW+D G G + RH
Sbjct: 308 GGFGLLCMRGWLDGGGGHAVRRH 330
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 500 PCWHSGMDRPRKRIPSSASSTEVSQTRPLIPRMP 399
PC H+ PR+ P++AS+ VS + L+PR P
Sbjct: 301 PCDHA----PRRSSPAAASAPPVSASSALLPRRP 330
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 195 SGSHLQDS*NCRKHVRLRQFTSRSKR*TDEFKKYSPGKDSQRTR-EDPRIPKE 350
SG H S RKH + R+ R +DE S K+S+R R E+ R+ KE
Sbjct: 188 SGKHRSHS-EKRKHKKSRKHKRRYDDSSDESNSESDDKESKRRRKEEKRLRKE 239
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 461 IPSSASSTEVSQTRPLIPRMPPYIISTVTSPT 366
+PS+A S +V+ + P I R PP + + T PT
Sbjct: 162 VPSNAKSADVASSTPKIQRPPP-VKAVTTVPT 192
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 253 SLRGLSAEQT-NLKSILQEKIPKEQEKIREFRKKHGST 363
S+R L QT NLK L K+P E ++R FR ST
Sbjct: 569 SIRKLQGLQTLNLKRSLITKVPAEVTELRSFRSLRCST 606
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 482 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 354
MDR R+R P S S S P PR P + V P L EP
Sbjct: 1 MDRLRRRNPKSVPSGSSSMKPPRPPRGPSFQAPAVPRP-LPEP 42
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 246 RQFTSRSKR*TDEFKKYSPGKDSQRTREDPRIPKEAWFH*SRRGHS*YDVRWHAWNQRS 422
R+ TSR +R + +++ GKD R R+ R F + H D R H+ ++RS
Sbjct: 351 RKTTSREERDSGRYRERDEGKDVSRDRKTEREDSRGSFKDRKLDHD--DDRDHSRDRRS 407
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 25 PAVAAALELVDPPGCRNSAAADPLNFFFRHL 117
P+ AA +E P +SAAAD ++ + RHL
Sbjct: 51 PSAAAEVEPTGSPSSSSSAAADMISRYRRHL 81
>02_04_0088 + 19633641-19634228
Length = 195
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 316 KEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD----ADEG-IRFRGLS 480
+E+E RE K+H + G V + M+G R +K V + +V D A G + R
Sbjct: 110 EERESARERLKRHRTEMAGRVRIPEMWGQERLLKDWV-DCAVFDRPLAATRGLLTARDAL 168
Query: 481 IPECQQGQTRP 513
+ EC RP
Sbjct: 169 VAECAAPARRP 179
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 486 RDG*TTETDSFIGIQHRGFPNQTFDSTHATVHH 388
+DG D IG++ + FP + D T A HH
Sbjct: 407 KDGELDSKDLDIGLKRKPFPRKMEDPTSADAHH 439
>06_01_0612 - 4429605-4431152
Length = 515
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 470 RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPT-LVEPCFFR 342
R+R+P S S V+ P P++PP + ST P+ + P F R
Sbjct: 74 RRRLPPSPSVRVVAIPFPAHPQIPPGVESTDALPSQSLFPAFLR 117
>04_02_0012 +
8537124-8537464,8537558-8537693,8538811-8538861,
8540190-8540413,8540491-8540715,8541520-8541619,
8541703-8541763,8543029-8543100,8543183-8543406
Length = 477
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -2
Query: 500 PCWHSGMDRPRKRIPSSASSTEVSQTRPLI-PRMPPYIISTVTSPTLVEPC 351
PC G P S TE TRPL P + I +++S + PC
Sbjct: 143 PCQCDGCTPPASAASGSQVGTEYLITRPLFNPARASFYIPSMSSTSQAVPC 193
>03_05_0466 -
24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 49 LVDPPGCRNSAAADPLNFFFRHLRMRSIAGK 141
+V P GCRN P+ F H M S+A +
Sbjct: 114 VVQPSGCRNGLGKVPI--FLTHFTMNSVAAR 142
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 193 IQDHIFKTRRIAESMSDCDSSLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKH 354
I DH R++ + +SD SLR LS S E+ P +E + K+H
Sbjct: 1017 IDDHDGHLRKLLQVISDLSGSLRSLSITLIGTGS---EQAPSSEETSADCLKQH 1067
>11_04_0377 + 16977586-16977843
Length = 85
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +1
Query: 289 KSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGL 423
K+IL+++I ++ E R+K+ ++ + D+M G + L
Sbjct: 6 KTILEQQIAAATARLEELRRKNRELEIKLIVCDLMSGRRNNVDDL 50
>07_01_1124 +
10392909-10392974,10393037-10393455,10393503-10393657,
10393792-10394247,10394379-10395298
Length = 671
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 229 ESMSDCDSSLRGLSAEQTNLKSILQEKIPK 318
ESM +C S++ LS TN+K I+ K K
Sbjct: 415 ESMFECLESIKVLSRYSTNIKRIISTKEKK 444
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 421 LVWETSVLDADEGIRFRGLSIPECQQGQTRPRL 519
++W + D+ G S+P CQ G R RL
Sbjct: 34 MLWNAVIFGPDDTPWDGGFSLPVCQHGNLRSRL 66
>03_06_0220 +
32452831-32452944,32453618-32453911,32454416-32454503,
32454596-32454717,32454985-32455142,32455201-32455273,
32455552-32455640,32455753-32455858,32455967-32456179,
32456726-32456920,32457051-32457128,32457209-32457523
Length = 614
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 249 VAVGHAFCNSTSLEDVILNRAIFKA--AERKLPHKSRQLARDRSHTQVTEKK 100
+A F N + + ++ A+ + A+R+ HK+ RD++H +V++ K
Sbjct: 27 IAANEVFYNPVQVHNRDMSVALLRTFIAKREEEHKAMMDKRDKAHNKVSQSK 78
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 196 QDHIFKTRRIAESMSDCDSSLRGLSAEQTNLKS-ILQEKIPKEQEKIREF 342
+D R+ S +CD ++ GLS+ + K+ +QE + Q +R+F
Sbjct: 132 EDQKQNKRKKEASPEECDQAVEGLSSAKAKAKAKQVQESVKAGQSIVRKF 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,469
Number of Sequences: 37544
Number of extensions: 294874
Number of successful extensions: 927
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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