Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1066
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical pr...   106   1e-23
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    30   0.87 
Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    28   3.5  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    28   3.5  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z47812-2|CAA87789.2|  396|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine rece...    27   8.1  
AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective spe...    27   8.1  

>Z30423-2|CAA83004.1|  468|Caenorhabditis elegans Hypothetical
           protein T20G5.2 protein.
          Length = 468

 Score =  106 bits (254), Expect = 1e-23
 Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
 Frame = +1

Query: 244 CDSSLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKG 420
           C  +    SAE  TNLK +L +KIP    K++ FR +HGST V  V +DM+YGGMR +KG
Sbjct: 20  CQVAPLSTSAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGSTVVQNVNIDMIYGGMRSMKG 79

Query: 421 LVWETSVLDADEGIRFRGLSIPECQQ 498
           +V ETSVLD +EGIRFRG SIPECQ+
Sbjct: 80  MVTETSVLDPEEGIRFRGYSIPECQK 105


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 473 PRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 354
           P +  P    ST   Q RP  PR  PY+  + T+   +EP
Sbjct: 226 PARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEP 265


>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -2

Query: 311 IFSWRILFKFVCSALRPRSELSQSDMLSAILRVLKM*S*IEPFLKPP--SANYHTNHDNL 138
           I+  ++L+ F C+      ELS  D + A+++ + M   I P+L P   S +Y  + +NL
Sbjct: 235 IYFVQMLYIFTCAVRIFTYELSGHDSIEAVMQCVNM---IVPYLIPTIISISYTASRENL 291

Query: 137 PAI 129
            AI
Sbjct: 292 RAI 294


>Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical
           protein C44C10.11 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 265 LSAEQTNLKSILQEKIPKEQEKIREFRKKH 354
           L+ E  NLK  L++K   E + I E +KKH
Sbjct: 318 LTEENHNLKEQLKQKTDAETKMIAEMKKKH 347


>Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical
           protein T14G10.5b protein.
          Length = 883

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -2

Query: 509 RVWPCWHSGMDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSP--TLVEPCFFRNS 336
           RV P     + +P KR+P      E    +P  P++ PY       P    + P F  ++
Sbjct: 586 RVVPVTQQALSQPEKRVPQLVEEEE----KPKAPKVEPYAAQLAAIPQFAALGPVFKSST 641

Query: 335 RI 330
           RI
Sbjct: 642 RI 643


>Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical
           protein T14G10.5a protein.
          Length = 870

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -2

Query: 509 RVWPCWHSGMDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSP--TLVEPCFFRNS 336
           RV P     + +P KR+P      E    +P  P++ PY       P    + P F  ++
Sbjct: 573 RVVPVTQQALSQPEKRVPQLVEEEE----KPKAPKVEPYAAQLAAIPQFAALGPVFKSST 628

Query: 335 RI 330
           RI
Sbjct: 629 RI 630


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 428 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 333
           QTRP  P++PP  I+     T V+P FF+ +R
Sbjct: 365 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 394


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 428 QTRPLIPRMPPYIISTVTSPTLVEPCFFRNSR 333
           QTRP  P++PP  I+     T V+P FF+ +R
Sbjct: 462 QTRP--PQLPPVQITQPPIQTPVQPIFFQTTR 491


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 223 IAESMSDCDSSLRGLSAEQT-NLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVD 387
           IA S S   S+   L  + + NLK +  EK+   Q+  +  R   G +  GE ++D
Sbjct: 332 IAPSSSALKSNFAALQEKMSRNLKVVAPEKVASIQKPDQRDRSSTGESTTGEPSID 387


>Z47812-2|CAA87789.2|  396|Caenorhabditis elegans Hypothetical
           protein T05H10.2 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +1

Query: 187 GSIQDHIFKTRRIAESMSDCDSSLRGLSAEQTNLK---SILQEKIPKEQEKIREFRKKHG 357
           G IQ HI KT +  +   + ++   G + E+T  +   S  +E+  K + K ++ RK  G
Sbjct: 34  GKIQKHIQKTLQKMKEEEESENQSPGTTVEETLTEENISTDKEETSKLENKPKKTRKTSG 93

Query: 358 ST 363
            T
Sbjct: 94  ET 95


>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical protein
            F20D12.2 protein.
          Length = 1116

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 193  IQDHIFKTRRIAESMSDCDSSLRGLSAEQTNLKSILQEKIPKEQEKIREFRK 348
            IQ  +FK RR    ++D     +  + ++  LK I +EK  +E E    F K
Sbjct: 921  IQVIMFKRRRQHRIVNDMFQKWKSYTKKRKALKRIAEEKQKRENEFFSRFNK 972


>U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine
           receptor, class v protein1 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 243 VGHAFCNSTSLEDVILNRAIFKAAERKLPHKSRQLARDRSHTQVTE 106
           V    CNS++L  + LNR I KA  R L   S Q    ++H  + +
Sbjct: 261 VNDVLCNSSALVLLALNRPIRKAFTRHLGVFSYQGVSTKNHNSLLQ 306


>AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective
           spermatogenesis protein 8 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 285 IRLFSA*TSK*TVAVGHAFCNSTSLEDVILNRAIFKAAERKL 160
           I+ +   T K  + +   FC+  SLED +L++    +AE K+
Sbjct: 281 IKFYGVCTMKEPIMIVMEFCDGKSLEDALLSKEEKVSAEDKI 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,533,215
Number of Sequences: 27780
Number of extensions: 226870
Number of successful extensions: 859
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)