Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1066
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   5.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 163 FALGGFKNGSIQDHIFKTRRIAESMSDCDSSLRGLSAEQTNLKSILQEKIPK 318
           F L  +  GS    I K R + + + D D SLR L++    ++    + +PK
Sbjct: 53  FVLDPWFAGSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPK 104


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 320 SLGIFSWRILFK 285
           SLGI +W++LF+
Sbjct: 239 SLGIVAWQMLFR 250


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 423 QTFDSTHATVH-HINCDLSDFSGTML 349
           +T  S+H  +  HINCD S F   ++
Sbjct: 52  KTLISSHDELPGHINCDSSKFEEDLM 77


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 509  RVWPCWHSGM 480
            R+ PCWH+ M
Sbjct: 1462 RLGPCWHAVM 1471


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 517 ALGGFGLVGTQGWIDHG 467
           A G F  +G+ GW   G
Sbjct: 366 ATGAFSWIGSDGWSARG 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,180
Number of Sequences: 438
Number of extensions: 2753
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)