Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1064
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   2.5  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   5.9  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   5.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   5.9  

>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 168 NHSPSGGPYARLPTRAIKKKNKRSAAARGGPGT 266
           N SPSG P ++    + +K +   ++A GG G+
Sbjct: 76  NQSPSGAPESQTEEESDRKIDGTGSSAEGGDGS 108


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 185 T*W*VVTVAHGLQQCQGQSQAAAYRLILST 96
           T W +V++ HGLQ C   +   A+ ++ +T
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSAT 230


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 370 HPPFASWRNSEEGPPAPIAPFFPKQ 444
           +P   S  +   GP  P++PFF K+
Sbjct: 22  NPHLDSHYSDSSGPSKPVSPFFKKE 46


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 153 TSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTMEGSSFHSRMVRG 13
           TS++P    S     NTL  P L  + S    +T+  + FH+  + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,087
Number of Sequences: 5004
Number of extensions: 51468
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)