Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1064
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0130 + 1540412-1541173 32 0.21
09_02_0036 + 3217163-3217584,3217752-3218322 30 0.83
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 29 1.9
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 29 2.5
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 29 2.5
10_02_0172 - 6162692-6163066 28 3.3
04_03_0095 + 11114971-11115939,11115954-11116556 28 3.3
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837 28 4.4
07_03_0600 + 19866757-19867218,19867920-19868429 28 4.4
07_01_0287 - 2094333-2094542,2094719-2095999 28 4.4
11_06_0610 - 25449085-25453284 27 5.8
08_02_1087 + 24245535-24246350 27 5.8
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 27 5.8
06_01_0734 + 5419951-5420475 27 5.8
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 27 5.8
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615... 27 5.8
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 5.8
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 27 7.7
11_01_0529 - 4158926-4158993,4160010-4160076 27 7.7
06_03_1146 - 28004896-28005554,28005664-28005844 27 7.7
06_03_0804 + 24761974-24763196,24763674-24764019 27 7.7
05_03_0263 + 11234850-11235044,11235413-11237341 27 7.7
04_04_1176 + 31494318-31495685 27 7.7
04_03_0721 + 19012215-19012306,19012697-19012777,19012890-19012905 27 7.7
03_06_0139 + 31947413-31948087,31948869-31948911,31949837-31950132 27 7.7
>10_01_0130 + 1540412-1541173
Length = 253
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 298 NCNTTHYRANWVPGPPRAAADRLFFFFIALVGRRAYGPPDGEWLP-SPMDF 149
N +T+ R P P AAA +++F F +A P + +WL P+ F
Sbjct: 196 NYRSTYRRGRRRPSPAAAAASKMYFAFCPFCVAKAAQPKNAQWLDMDPLAF 246
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 290 ITIHWPSFYNVV-TGKTLALPNLIALQH 370
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>02_02_0453 + 10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1
Query: 325 DWENPGVTQLNRLAAHPPFASWRNSEEGPPAPIA 426
DW GV L + PF SWR SE P A IA
Sbjct: 938 DWWALGVLIYFMLQSDMPFGSWRESELEPFAKIA 971
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 347 PNLIALQHIPLSPAGVIAKRG--PRHRSPPFSPNKVWPPRPP 466
P L +P P V+ +G PR R PPF+ ++P RPP
Sbjct: 862 PALAGQGFVPRHPPPVLPNQGFFPR-RCPPFAGQDLYPWRPP 902
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 389 GVIAKRGPRHRSPPFSPNKVWPP 457
G + P H PPF+P V PP
Sbjct: 908 GPFPRHAPPHPCPPFTPGHVRPP 930
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 389 GVIAKRGPRHRSPPFSPNKVWPPRPPL 469
G A R PR PP P PP PPL
Sbjct: 88 GSAASRPPRPPRPPLPPRPPRPPLPPL 114
>10_02_0172 - 6162692-6163066
Length = 124
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +2
Query: 47 SMVFPERYDMSFFKRGLWR---VLSGRQRLGSAPGIA---EVHGRR*PLTIRWAVCSSAY 208
S+ R+D+ F +G WR + RL A A V RR L WA C S Y
Sbjct: 3 SLCSSSRFDLVFEMKGRWRREGAAAMAMRLNEAVWHATGGSVWRRRQELAFLWADCESGY 62
Query: 209 KG 214
G
Sbjct: 63 DG 64
>04_03_0095 + 11114971-11115939,11115954-11116556
Length = 523
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 131 SQAAAYRLILSTSLV*RRTCHSA--QETPW--RGAHSIAGWYVAK 9
+Q RL+L +LV R C Q+ W + H I GW+V+K
Sbjct: 472 TQRLLARLLLGNALVLERVCVKLVKQKLAWQLKQKHDIEGWFVSK 516
>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
Length = 730
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -3
Query: 461 ALAAKPCLGKKGAIGAGGPSSLLRQLAKGGCAARRLSWVTPGFSQ 327
ALAA P L G G PS+L A+ G A+RRL + + +S+
Sbjct: 15 ALAAAPFLLLL-LYGGGSPSALCLAAARSGGASRRLQYPSVAWSR 58
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +2
Query: 347 PNLIALQHIPLSPAGVIAKRGPRHRSPPFSPNKVW--PPRPP 466
P Q PL P A GP H PP P +W PP PP
Sbjct: 39 PQPYCQQQQPLPPHYYQA--GPPHAPPPQQPPAMWGQPPPPP 78
>07_01_0287 - 2094333-2094542,2094719-2095999
Length = 496
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 9 FCHVPSGYGMSSPPWCFLSAMTCPSSNEACG 101
F H G P W F S TCP + CG
Sbjct: 462 FAHGEVELGKKEPCWYFFSGQTCP-RGDTCG 491
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 371 IPLSPAGVIAKRGPRHR--SPPFSPNKVWPPRPP 466
+P++ AK P H SPP +P K +PP P
Sbjct: 1067 VPVTSEPPPAKSSPPHEPISPPETPEKSYPPSTP 1100
>08_02_1087 + 24245535-24246350
Length = 271
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 464 GALAAKPCLGKKGAIGAGGPSSLLRQLAKGGCAA 363
G AA P K A P ++ +AKGGC A
Sbjct: 25 GKAAAAPAKAKAPAAPPPAPPNITASMAKGGCKA 58
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 117 GSGLALPLALLKSMGDGNHSPSGGPYARLPTRAIKKKNK 233
GS LA L LL M PSG YARL RA+ + +
Sbjct: 64 GSDLASSLRLLADMQAAGLRPSGAAYARL-IRALARAGR 101
>06_01_0734 + 5419951-5420475
Length = 174
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 81 SSNEACGEY*AVGSGLALPLALLKSMGDGNHSPSG 185
S+ A + G GL LA L MGDG SP G
Sbjct: 96 SAAAAAADRRGAGGGLMYLLAQLMGMGDGGGSPYG 130
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 27.5 bits (58), Expect = 5.8
Identities = 24/83 (28%), Positives = 33/83 (39%)
Frame = +3
Query: 24 SGYGMSSPPWCFLSAMTCPSSNEACGEY*AVGSGLALPLALLKSMGDGNHSPSGGPYARL 203
+G SPPW S S + A + G G LP + GD +GG A
Sbjct: 747 NGVAEGSPPWSSPSTRRRLSGSSAKPDGHKDGGGATLPSRGCPAAGD-----TGGFSAVA 801
Query: 204 PTRAIKKKNKRSAAARGGPGTQF 272
R + +RS +A G G+ F
Sbjct: 802 DHRRWRPDGRRSGSAHTGCGSAF 824
>05_01_0008 +
60498-60552,60644-60864,60956-61013,61271-61443,
61528-61711,61823-61993,62483-62514,62596-62638,
62768-62835,63561-63605,63695-64162
Length = 505
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 407 GPRHRSPPFSPNKVW-PPRPP 466
G RSPP P + W PP+PP
Sbjct: 418 GAEERSPPPPPQRRWVPPQPP 438
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 302 WPSFYNVV-TGKTLALPNLIALQH 370
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
Length = 680
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 302 WPSFYNVV-TGKTLALPNLIALQH 370
W F N+V +G TL+LP + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437
>11_01_0529 - 4158926-4158993,4160010-4160076
Length = 44
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 301 LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSE--EGPPAPI 423
+A++LQRR + G + + LAA P +W N + E PP I
Sbjct: 1 MALLLQRRHGADAGGDRHHHLAAEWPKVTWHNLDFLEIPPDEI 43
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 392 VIAKRGPRHRSPPFSPNKVWPPRPPL 469
V+A RG RH PP SP V PP P+
Sbjct: 131 VMADRGGRHAPPP-SPPAVPPPVAPV 155
>06_03_0804 + 24761974-24763196,24763674-24764019
Length = 522
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 78 PSSNEACGEY*AVGSGLALPLALLKSMGDGN-HSPSGGPYARLPTRAIKKKNKRSAAA 248
PS C + A+ AL + + S G+ + S GGP A LP KK +AAA
Sbjct: 55 PSPFPVCADPAALSPPRALAVRTVASSGNASVSSDPGGPPASLPEVGNKKPVAAAAAA 112
>05_03_0263 + 11234850-11235044,11235413-11237341
Length = 707
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 278 IVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRGPRHRSPPFSPNKVWPP 457
+V I ++ +V+ +T A+ L+AL + ++ V+A P R+PP+ V P
Sbjct: 302 LVELIVLNIGKDRHVLNDETFAILVLMALINTFITTPLVMAIYKPARRAPPYKNRAVQRP 361
Query: 458 RP 463
P
Sbjct: 362 NP 363
>04_04_1176 + 31494318-31495685
Length = 455
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 32 WNELPSMVFPERYDMSFFKRGLWRVLSG 115
W LP M P R FF G + V+ G
Sbjct: 282 WETLPDMNLPRRLSSGFFMDGKFYVIGG 309
>04_03_0721 + 19012215-19012306,19012697-19012777,19012890-19012905
Length = 62
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 374 PLSPAGVIAKRGPRHRSPPFSPNKVWPPRPPLGK 475
P GV R P+ ++P +VW PLGK
Sbjct: 21 PTKVMGVPKNRFPKVKTPDIDNTQVWSVNVPLGK 54
>03_06_0139 + 31947413-31948087,31948869-31948911,31949837-31950132
Length = 337
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 347 PNLIALQHIPLSPAGVIAKRGPR 415
P+ + L HIPLSP VI G R
Sbjct: 46 PDRLTLNHIPLSPDTVIEVNGQR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,218,309
Number of Sequences: 37544
Number of extensions: 496859
Number of successful extensions: 1854
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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