Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1064
(475 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family... 29 2.1
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 28 3.7
At5g60570.1 68418.m07594 kelch repeat-containing F-box family pr... 27 4.9
At1g50910.1 68414.m05724 expressed protein 27 4.9
At1g27020.1 68414.m03294 expressed protein 27 4.9
At5g25090.1 68418.m02973 plastocyanin-like domain-containing pro... 27 6.5
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 27 8.6
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 27 8.6
At2g25060.1 68415.m02997 plastocyanin-like domain-containing pro... 27 8.6
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family... 27 8.6
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c... 27 8.6
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c... 27 8.6
At1g01160.1 68414.m00026 SSXT protein-related / transcription co... 27 8.6
>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
protein sequencing discrepancy between cDNA and genomic
sequence prevents representation of entire coding
sequence
Length = 578
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 365 QHIPLSPAGVIAKRGPRHRSPPFSPNKVWPPRPP 466
Q L+ G + R RSPP SP V PP PP
Sbjct: 452 QQSELAMTGDVTPSANRVRSPP-SPRSVMPPPPP 484
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 217 IALVGRRAYGPPDGEWLP-SPMDFSNARGRA 128
+ + G + Y P GEW+ SP+D GRA
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRA 881
>At5g60570.1 68418.m07594 kelch repeat-containing F-box family
protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
F-box domain
Length = 393
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 32 WNELPSMVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR*PL-TIRWAVCSSAY 208
W LP+M P R FF G + V+ G S+P ++ G L T +W Y
Sbjct: 218 WEMLPNMHSPRRLCSGFFMDGKFYVIGGM----SSPNVSVTFGEEFDLETRKWRKIEGMY 273
>At1g50910.1 68414.m05724 expressed protein
Length = 552
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 168 YRRPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTMEGSSFHSRMVRG-KKD 4
+R + +P PS + NT+ +P LKK + + E F++ ++RG +KD
Sbjct: 495 FRATKVAFLPVKRPSSAITPNTIEQPPLKKQET-GEKDKKEEDGFYNLLIRGTQKD 549
>At1g27020.1 68414.m03294 expressed protein
Length = 308
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 328 WENPGVTQLNRLAAHPPFASW 390
WE P T N+LA FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183
>At5g25090.1 68418.m02973 plastocyanin-like domain-containing
protein
Length = 186
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 319 VVKRRPVNCNTTHYRANWVPGPPRAAADRLF-FFFIA 212
V K +NCNTT+ AN+ G + +R +FFI+
Sbjct: 74 VTKDAYINCNTTNPAANYSNGDTKVKLERSGPYFFIS 110
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 307 VVLQRR---DWENPGVTQLNRLAAHPPFASWRNSEEGPPAPIAPFFP 438
V L RR D+E+P L+ ++ PPF +S PP P+ P P
Sbjct: 27 VTLSRRLLYDYESPLPLPLSPIS--PPFFPLESSPPSPPPPLPPTPP 71
>At2g48050.1 68415.m06014 expressed protein ; expression supported by
MPSS
Length = 1500
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 232 LFFFFIALVGRRAYGPPDGEWLPSPMDFS---NARGRAKPL 119
LF +I + + + DG+W+PS DF+ NARG K L
Sbjct: 1092 LFLIYIFTLIQSSITVKDGDWVPS-ADFTSRRNARGSQKDL 1131
>At2g25060.1 68415.m02997 plastocyanin-like domain-containing
protein
Length = 182
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 322 DVVKRRPVNCNTTHYRANWVPGPPRAAADRLF-FFFIA 212
+V K +CNTT+ AN+ G + DR F+FI+
Sbjct: 78 EVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFIS 115
>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
protein
Length = 558
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 344 LPNLIALQHIPLSPAGVIAKRGPRHRSPPFSPNKVWPPRPP 466
LP L +SPA + KR S PF+P PP PP
Sbjct: 229 LPPTPPLPKFLVSPASSLGKRD--ENSSPFAPPTPPPPPPP 267
>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
Glycerol-3-phosphate acyltransferase, chloroplast
precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
thaliana}; contains Pfam profile PF01553:
Acyltransferase
Length = 459
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 205 GRRAYGPPDGEWLPSPMDFSN 143
GR P GEW P+P D S+
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344
>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
Glycerol-3-phosphate acyltransferase, chloroplast
precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
thaliana}; contains Pfam profile PF01553:
Acyltransferase
Length = 459
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 205 GRRAYGPPDGEWLPSPMDFSN 143
GR P GEW P+P D S+
Sbjct: 324 GRDRPNPSTGEWFPAPFDASS 344
>At1g01160.1 68414.m00026 SSXT protein-related / transcription
co-activator-related similar to SYT/SSX4 fusion protein
(GI:11127695) [Homo sapiens]; supporting cDNA
gi|21539891|gb|AY102640.1|; contains Pfam profile
PF05030: SSXT protein (N-terminal region)
Length = 195
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 362 LQHIPLSPAGVIAKRGPRHRSPP 430
+QH SPAG+ A RGP P
Sbjct: 106 MQHPQASPAGIFAPRGPLQFGSP 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,147,197
Number of Sequences: 28952
Number of extensions: 324004
Number of successful extensions: 1002
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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