Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1063
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    27   1.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   1.7  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   2.2  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    25   5.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   6.8  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    24   9.0  

>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 93  HHSFLKRENFMDVL--IRSLPGQLVLSI 16
           H  FLK + FM+VL  +++LPG  +L++
Sbjct: 66  HPKFLKNQVFMEVLTALQNLPGMALLTV 93


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 215 SYEDKFKTFVTNKKNIYLLADPADFVVPQPINKRPKLLY 331
           S+   F+ FV++ +NI +     + VVP  + K+  +LY
Sbjct: 177 SHSPTFRPFVSSIRNICIKILDGEEVVPSSLQKKAAVLY 215


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 346 TNKRNPSDGGPSKEKQNCYFYFKNFPEH 429
           +NK  P DG   K +   Y + K FPE+
Sbjct: 63  SNKFYPVDGVVPKHETQAYEFLKKFPEY 90


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 394 NCYFYFKNFPEHF 432
           +CYFYF N+  HF
Sbjct: 83  SCYFYFLNWLRHF 95


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 364 TDSFCLFYVYFIQKFRSFIYRLRHYEVCRVS 272
           T + C+F ++F+   R+     RH   C +S
Sbjct: 338 TSAICMFTIFFVPCARTLWAICRHLRTCPLS 368


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 290 VVPQPINKRPKLLYKINIKQTKGIRLTG 373
           V+  P+ K P+L  ++ IK  KG+ L G
Sbjct: 147 VIELPL-KNPELFLRVGIKPPKGVLLYG 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,933
Number of Sequences: 5004
Number of extensions: 33654
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)