Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1063
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50185| Best HMM Match : CsrA (HMM E-Value=3.9)                      32   0.18 
SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.18 
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)               27   5.2  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               27   6.9  

>SB_50185| Best HMM Match : CsrA (HMM E-Value=3.9)
          Length = 121

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 212 DSYEDKFKTFVTNKKNIYLLADPADFVVPQPINKRPKLLYKINIKQTKGIRLTGA 376
           DS +D+ +TF  ++      AD    VVPQ    +P+++  I ++  KG ++  A
Sbjct: 11  DSEDDEIRTFKNSRSPTKSKADHQKPVVPQATAYKPEVINDIRVQVNKGRKMVNA 65


>SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 212 DSYEDKFKTFVTNKKNIYLLADPADFVVPQPINKRPKLLYKINIKQTKGIRLTGA 376
           DS +D+ +TF  ++      AD    VVPQ    +P+++  I ++  KG ++  A
Sbjct: 154 DSEDDEIRTFKNSRSPTKSKADHQKPVVPQATAYKPEVINDIRVQVNKGRKMVNA 208


>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
          Length = 435

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 305 INKRPKLLYKINIKQTKGIRLTGAHQRKNKIVIFIL 412
           + K P   YK NI   KG+      + ++++V+F++
Sbjct: 216 VKKEPTNKYKYNIPLDKGVSFDSEIKNRSRVVLFLV 251


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 214 IMEDNNLKKLIVYSLFYPNRDIMISL 137
           I  DN L+K  V S   PN+D+M SL
Sbjct: 792 IKPDNILEKTTVLSAINPNKDVMESL 817


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,440,814
Number of Sequences: 59808
Number of extensions: 207115
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)