Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1063
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserin...    27   5.6  
At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserin...    27   5.6  
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    26   9.8  

>At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserine
           dehydrogenase, putative / AK-HSDH, putative similar to
           gb|X71364 [PIR|S46497] aspartate kinase / homoserine
           dehydrogenase from Arabidopsis thaliana
          Length = 916

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 214 IMEDNNLKKLIVYSLFYPNRDIMISLIRK 128
           I+ DN+ +KL+V S      D+M  LIRK
Sbjct: 112 IINDNSERKLVVVSAMSKVTDMMYDLIRK 140


>At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserine
           dehydrogenase, putative / AK-HSDH, putative similar to
           gb|X71364 [PIR|S46497] aspartate kinase / homoserine
           dehydrogenase from Arabidopsis thaliana
          Length = 859

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 214 IMEDNNLKKLIVYSLFYPNRDIMISLIRK 128
           I+ DN+ +KL+V S      D+M  LIRK
Sbjct: 112 IINDNSERKLVVVSAMSKVTDMMYDLIRK 140


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 138 SLEKITKSDWYIFXHHHSFLKRENFMD 58
           +L+K    DW    HHH FL + + +D
Sbjct: 898 TLQKTFPPDWSSHHHHHGFLDQVSDVD 924


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,247,818
Number of Sequences: 28952
Number of extensions: 149965
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)