Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1061
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   0.36 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   1.9  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    26   3.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   3.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.4  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    25   4.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   5.9  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 199 TLFLLVVGPLVSPRGWVP 146
           TLFLLV+ PL  PR W P
Sbjct: 164 TLFLLVIIPLFFPRAWSP 181


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 39  NVSALP*DTSSKVSSIVTTPAPPFKPKLITASRQGGGTHPRGLTRGPTTSKKSVFASLRR 218
           + S++     S  S + ++ A       I  S+ G  +    L   PT+S   V + LRR
Sbjct: 375 STSSMDSSAVSSYSVVQSSLASIISNAYIATSKSGLNSGVSTLLASPTSSSTFVTSLLRR 434

Query: 219 SSVD 230
           SS+D
Sbjct: 435 SSID 438


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 283 ELVHLLYASKPDKYVPVISTELLRSDANTLFLLV 182
           + +H + AS P KY+  +++  + +  NTLFL +
Sbjct: 195 QFIHFILASMPTKYIAKLNS--VGTYLNTLFLFI 226


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
 Frame = +3

Query: 21  EPIDIHNVSAL-P*DTSS----KVSSIVTTPAPPFKPKLITASRQGGGTHPRGLTRGPTT 185
           EP+ + N S + P    S    K SSI+    PPF+ + IT S +  G      +     
Sbjct: 600 EPVSLENQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTEIEGIKESFASTDTGL 659

Query: 186 SKKSVFAS-LRRSSVDITGTYLSGLDA*SKCTSSLFKNSDPPSLRFGNCNLLLIS 347
              S   S  +RS  ++T + +   +       S   +S P ++  G  ++ ++S
Sbjct: 660 QNNSTATSENKRSESELTMSNVLSNEGDRNEEGSEINSSQPSTINHGTDHINIVS 714


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 26/96 (27%), Positives = 40/96 (41%)
 Frame = +3

Query: 21  EPIDIHNVSALP*DTSSKVSSIVTTPAPPFKPKLITASRQGGGTHPRGLTRGPTTSKKSV 200
           +P D  N  +    T    S+ +T+P        IT+S     + P   +    TS    
Sbjct: 350 KPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPIT 409

Query: 201 FASLRRSSVDITGTYLSGLDA*SKCTSSLFKNSDPP 308
            +S+  SS  IT +  S L++ +  TSS   NS  P
Sbjct: 410 SSSVLNSSTPITSS--SILNSSTPITSSTVLNSSTP 443


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = -2

Query: 130 AVMSFGLKGGAGVV-TILETLELVSQ----GSALTL*MSMGSSNHL 8
           AV+SFG KGG      ++  L+L SQ    G A TL ++   + HL
Sbjct: 344 AVLSFGAKGGPDQSRKVVNALKLASQLANVGDAKTLVIAPAYTTHL 389


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 276 TSSLFKNSDPPSLRFGNCNLLLISPIFNGCYL 371
           T     ++ PP LRF   N+L  + I +G YL
Sbjct: 300 TEKFLSSAMPPGLRFPAVNILGDNLILSGIYL 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,857
Number of Sequences: 5004
Number of extensions: 44912
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)