Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1061
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0267 - 22538631-22539452 29 1.4
01_05_0464 - 22470963-22472291 29 1.9
11_04_0034 + 12602323-12602521,12602694-12603202 29 2.5
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 29 2.5
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073... 29 2.5
01_01_0018 + 139150-140415 29 2.5
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 28 3.3
06_01_1022 + 7992901-7994676 28 4.4
04_04_0702 + 27383876-27384862 28 4.4
05_01_0235 - 1768049-1769634,1770695-1770815,1770965-1771033,177... 27 7.7
04_04_0588 - 26412487-26413887 27 7.7
>03_05_0267 - 22538631-22539452
Length = 273
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 12 WLLEPIDIHNVSALP*DTSSKVSSIVTTPAPPFKPKLITASRQGGGTHPR 161
W++ + + + L D + +S+++ T P + KLI A ++ GG H R
Sbjct: 224 WVIPSVVVALLRPLVCDADAVISAVLATQVPD-QTKLIDAIKEAGGDHVR 272
>01_05_0464 - 22470963-22472291
Length = 442
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 186 SKKSVFASLRRSSV-DITGTYLSGLDA*SKCTSSLFKNSDPPSLRFGNCNL 335
S +V AS+ ++ ++ GT L+ ++ S CT ++ +SDP G+ N+
Sbjct: 239 SSPTVLASMMSPALLEVAGTSLNPPNSHSICTMNMINSSDPSGSSIGDINV 289
>11_04_0034 + 12602323-12602521,12602694-12603202
Length = 235
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 72 KVSSIVTTPAPPFKPKL-ITASRQGGGTHPRGLTRGPTTSKKSVFASLR 215
K ++ TTP+ P + + I R GG + +GL R T SKK A R
Sbjct: 90 KYTTSTTTPSTPKEDRFRIQGVRTPGGGYGKGLLRPLTVSKKEGAAESR 138
>07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 66 SSKVSSIVTTPAPPFKPKLITASRQGGGTH 155
SS++ SIVT P P KPK+ +G G H
Sbjct: 1433 SSELISIVTAPILPGKPKIEKLEIEGRGFH 1462
>03_06_0557 +
34704990-34705400,34706271-34706485,34707142-34707367,
34707447-34707532,34708030-34708121,34708232-34708471,
34709455-34709750
Length = 521
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 419 ERFLARLTNSNSFLYIEITSIKYWR 345
ERFL T S F Y+ TS+K WR
Sbjct: 120 ERFLTSTTPSVPFQYLPKTSLKMWR 144
>01_01_0018 + 139150-140415
Length = 421
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 186 SKKSVFASLRRSSV-DITGTYLSGLDA*SKCTSSLFKNSDPPSLRFGNCNL 335
S +V AS+ ++ D+ G L+ ++ S CT ++ +SDP G+ N+
Sbjct: 239 SSPAVLASMMSPALLDVAGASLNPPNSHSICTMNMINSSDPSGSSIGDINV 289
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 84 IVTTPAP--PFKPKLITASRQGGGTHPRGLTRGPTTSKKSVFASLRRSSVDITGTYLSG 254
+ TTP P P + +S + PR L S+ S+ A+L SSV T T G
Sbjct: 259 VSTTPVPRNPIAAN-VASSSVAAASPPRNLASTTKVSQNSIAANLASSSVSATSTASRG 316
>06_01_1022 + 7992901-7994676
Length = 591
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 259 THKVNVQVLYLKIATRPRFASETVIYY*FLQYLMDVISIYKNELLFVS 402
T V + ++L A RP A +++ F+QYL + + + ++ FVS
Sbjct: 438 TQVVRISHIHLLQAVRPNTADGYIVFSNFIQYL-ESLKVQTKDVAFVS 484
>04_04_0702 + 27383876-27384862
Length = 328
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 465 RGAEIWG*PPGPPLSGKVFSETYEQQ 388
RGAE+W PP PP S T +++
Sbjct: 202 RGAELWAPPPPPPAHSAAASTTNKRK 227
>05_01_0235 -
1768049-1769634,1770695-1770815,1770965-1771033,
1771199-1771323,1771613-1771712,1771806-1771910,
1772559-1772657,1772751-1772867
Length = 773
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 99 APPFKPKLITASRQGGGTHPRGLTRGPTTS 188
APP P L+ A + RGL R PTTS
Sbjct: 2 APPSPPCLLRALLPVASSSSRGLRRRPTTS 31
>04_04_0588 - 26412487-26413887
Length = 466
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 388 LLFVSLAKNLSGKGGPRGLPP 450
L + S A NLS +GGP G+PP
Sbjct: 178 LRYWSEALNLSPRGGPGGVPP 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,494
Number of Sequences: 37544
Number of extensions: 327220
Number of successful extensions: 993
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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