Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1061
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               28   3.4  
SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               28   4.5  
SB_35702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_12536| Best HMM Match : Oxidored_q2 (HMM E-Value=2)                 27   6.0  
SB_11449| Best HMM Match : RtcR (HMM E-Value=1.9)                      27   7.9  
SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28)                 27   7.9  

>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 412  NLSGKGGPRGLPPNFRPP 465
            N+  +GGP G PP+F PP
Sbjct: 1103 NMMPQGGPPGAPPSFGPP 1120


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 63  TSSKVSSIVTTPAPPFKPKLITASRQGGGTHPRGLTRGPTTSKKSVFA-SLRRSSVDITG 239
           TS  ++   + P P    K  T  ++   T P  + R     ++ V A +  +SSVD TG
Sbjct: 712 TSPGMTKAASEPEPKSSTKQQTMRKENSSTQPDTVERDTAKKQEKVPANAANQSSVDETG 771

Query: 240 T 242
           T
Sbjct: 772 T 772


>SB_19550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 364 HPLNIGEINNKLQFPKRSEGGSL 296
           HP  +G+  N+L+ P+R  GG+L
Sbjct: 75  HPARLGDPPNRLERPRRVSGGAL 97


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 64  QVLRSQV*LQRLPHLSNRNSLLLHG 138
           Q LR Q  +QR P  + RNS+ LHG
Sbjct: 22  QALRQQNQVQRRPEPTPRNSIFLHG 46


>SB_35702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 449 GGNPRGPPFPERFLARLTN--SNSFLYIEITSIKYWR 345
           GGNP  PP+P   L   T+  S + L I I  I+Y R
Sbjct: 10  GGNPLPPPYPLLLLGDFTSRCSPANLIIRIGQIRYRR 46


>SB_12536| Best HMM Match : Oxidored_q2 (HMM E-Value=2)
          Length = 184

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -2

Query: 241 VPVISTELLRSDANTLFLLVVGP-LVSP--RGWVPPPCREAVMSFGLKGGAGVVTIL 80
           V ++  EL+ S  + L+ +   P  + P   GW+       V++F L GG  V+ IL
Sbjct: 79  VDIVGKELVPSGLSWLYTIAALPETIGPVLAGWIHDTTGSYVIAFYLFGGTSVLAIL 135


>SB_11449| Best HMM Match : RtcR (HMM E-Value=1.9)
          Length = 335

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 129 ASRQGGGTHPRGLTRGPTTSKKSVFASLRRSSVDITGTYLSGLDA 263
           ++R+GG T P  L     T +KSV A +R          L  LDA
Sbjct: 204 SARKGGWTRPERLYNEDRTVRKSVDAKIRSGKYKQIQIQLDELDA 248


>SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28)
          Length = 675

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 268 LYASKPDKYVPVISTELLRSDANTLFLLVVGP 173
           +Y  +P+KY+   S E    +A TL ++++GP
Sbjct: 165 VYVYQPEKYLCFFSMENPTLNAITLVIIIIGP 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,268,066
Number of Sequences: 59808
Number of extensions: 345967
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)