Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1061
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-18|CAA21010.2|  113|Caenorhabditis elegans Hypothetical...    29   1.7  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   2.3  
U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z92809-4|CAI06053.1|  615|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AM748822-1|CAO72176.1|  591|Caenorhabditis elegans hexosaminidas...    27   5.2  
AL023839-4|CAA19506.2|  615|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z69793-7|CAA93676.3|  527|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z69791-7|CAA93663.3|  527|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U23413-1|AAA64290.2|  182|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    27   9.1  
AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AL031633-18|CAA21010.2|  113|Caenorhabditis elegans Hypothetical
           protein Y39A1A.20 protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 312 LRFGNCNLLLISPIFNGCYLYI 377
           L FG C+  +++P+ + CYLY+
Sbjct: 46  LVFGLCSSAMVAPVLHSCYLYM 67


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 63   TSSKVSSIVTTPAPPFKPKLI 125
            TSS +SS  T+PAP  KP+++
Sbjct: 1296 TSSTISSTTTSPAPTQKPRIV 1316


>U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical
           protein F15A8.7 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 304 GSLFLNKELVHLLYASKPDKYVPV 233
           G   LN+E V L+YA  P  Y+P+
Sbjct: 157 GFAHLNEEQVKLVYADNPTSYLPI 180


>Z92809-4|CAI06053.1|  615|Caenorhabditis elegans Hypothetical
           protein Y39A1C.4 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 346 EINNKLQFPKRSEGGSLFLNKELVHLLYASKPDKYVPVISTEL 218
           EIN + ++PK S  G+L   + +VHL     P  Y P   TEL
Sbjct: 92  EINGE-KYPKLSPDGNLIPQRRIVHLDLKGAP--YKPEFFTEL 131


>AM748822-1|CAO72176.1|  591|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 346 EINNKLQFPKRSEGGSLFLNKELVHLLYASKPDKYVPVISTEL 218
           EIN + ++PK S  G+L   + +VHL     P  Y P   TEL
Sbjct: 92  EINGE-KYPKLSPDGNLIPQRRIVHLDLKGAP--YKPEFFTEL 131


>AL023839-4|CAA19506.2|  615|Caenorhabditis elegans Hypothetical
           protein Y39A1C.4 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 346 EINNKLQFPKRSEGGSLFLNKELVHLLYASKPDKYVPVISTEL 218
           EIN + ++PK S  G+L   + +VHL     P  Y P   TEL
Sbjct: 92  EINGE-KYPKLSPDGNLIPQRRIVHLDLKGAP--YKPEFFTEL 131


>Z69793-7|CAA93676.3|  527|Caenorhabditis elegans Hypothetical
           protein F39D8.4 protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 96  PAPPFKPKLITASRQGGGTHPRGLTRGPTTSKKSVFAS 209
           P+PPF   L   S     +H   L   PT+S  SVF+S
Sbjct: 57  PSPPF---LFLLSSSTDSSHTLSLMPSPTSSSASVFSS 91


>Z69791-7|CAA93663.3|  527|Caenorhabditis elegans Hypothetical
           protein F39D8.4 protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 96  PAPPFKPKLITASRQGGGTHPRGLTRGPTTSKKSVFAS 209
           P+PPF   L   S     +H   L   PT+S  SVF+S
Sbjct: 57  PSPPF---LFLLSSSTDSSHTLSLMPSPTSSSASVFSS 91


>U23413-1|AAA64290.2|  182|Caenorhabditis elegans Hypothetical
           protein B0353.1 protein.
          Length = 182

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +3

Query: 63  TSSKVSSIVTTPAPPFKPKLITASRQGGGTHPRGLTRGPTTSKKSVFASLRRSSVDI 233
           +SS +SS VT PAPP  P     S+     HP      PT  +    AS    S+DI
Sbjct: 112 SSSTLSSPVTAPAPPPPP----TSKPTVEVHPM-----PTDERSPSMASSLNGSIDI 159


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
 Frame = +1

Query: 154 TRADSQEVLPLVRKVYSHHSGEVQ*ILRERTYRVWTHKV---NVQVLYLK-IATRPRFAS 321
           T+ D  + L ++ K+Y +H      IL E T      KV   N+    LK +A R + A 
Sbjct: 226 TKIDENQ-LEMLSKIYENHLEFYTGILSESTCSQLLAKVIEDNLAKNELKQLARRCQTAE 284

Query: 322 ETV---IYY*FLQYLMDVISIYKNELLFVSLAKNLSGKGGPRGLP 447
             +   IYY  +  L     +  +EL+F+   K L  K   + LP
Sbjct: 285 VCMSPCIYYAMISVLRSTFDLNDSELIFIENLKTLKLKEITKHLP 329


>Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical
           protein H13N06.2 protein.
          Length = 454

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
 Frame = +3

Query: 12  WLLEPIDIHNVSALP*DTSSKVSSIVTTPAPPFK----------PKLITASRQGGGTHP 158
           W L  +DI N        S   S + TTP  P            P L +A   G G HP
Sbjct: 46  WKLAGVDISNFRTARPHQSPGTSPVTTTPVAPTNSLPMPPGTSTPSLSSAENSGNGPHP 104


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 337 NKLQFPKRSEGGSLFLNKELVHLLYASKPDKYVPVISTELL 215
           NK +  ++S   + +L K L+ +LYA+    ++P    E L
Sbjct: 139 NKFKITRKSTKATYYLTKLLIGVLYAASFTFFIPANQDEAL 179


>AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical
           protein H41C03.2 protein.
          Length = 356

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 86  SYNACPTFQTETHYCFTAGWWYPP 157
           +Y  C   Q ET YC    WW  P
Sbjct: 315 NYKICN--QPETEYCLKGSWWKKP 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,118,532
Number of Sequences: 27780
Number of extensions: 262209
Number of successful extensions: 757
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)