Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1061
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 385 HFYI*R*HPLNIGEINNKLQFPKRSEGGSLFLNKELVHLLYASK 254
           HFY    H      ++N L FP+       FL+K++++  Y  +
Sbjct: 230 HFYFMLNHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYLER 273


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 385 HFYI*R*HPLNIGEINNKLQFPKRSEGGSLFLNKELVHLLYASK 254
           HFY    H      ++N L FP+       FL+K++++  Y  +
Sbjct: 230 HFYFMLNHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYLER 273


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 464 GGRKFGGNPRGPPFPERFLARLTNSNS 384
           GG  F  + RGP F     +R+  SNS
Sbjct: 19  GGHGFDAHLRGPSFVMEPPSRVEFSNS 45


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 464 GGRKFGGNPRGPPFPERFLARLTNSNS 384
           GG  F  + RGP F     +R+  SNS
Sbjct: 19  GGHGFDAHLRGPSFVMEPPSRVEFSNS 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 136  GRVVVPTRADSQEVLPLVRKVYSHHSGEVQ*ILRERTYRVWTHKV 270
            G+ V   ++ +Q +L   ++ + HH  +V      +T R+  H V
Sbjct: 897  GKPVAVVKSSAQSLLQSNQQHFPHHQIQVSTSAGLQTIRLSGHSV 941


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 427 GGPRGLPPNFRP 462
           GGP G PP+  P
Sbjct: 49  GGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,262
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)