Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1061
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote...    27   4.9  
At3g15040.1 68416.m01903 expressed protein contains Pfam profile...    27   4.9  
At2g30700.1 68415.m03745 expressed protein                             27   4.9  
At1g23200.1 68414.m02898 pectinesterase family protein contains ...    27   4.9  
At1g15830.1 68414.m01900 expressed protein                             27   4.9  
At5g15400.1 68418.m01802 U-box domain-containing protein contain...    27   6.5  
At3g54210.1 68416.m05992 ribosomal protein L17 family protein co...    27   8.6  

>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1010

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 124 MSFGLKGGAGVVTILETLELVSQGSALTL*MSMGSSNHL 8
           +S G+    G +T+LETL+L + G    +  S+G+ +HL
Sbjct: 421 LSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHL 459


>At3g15040.1 68416.m01903 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 243

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 63  TSSKVSSIVTTPAPPFKPKLITASRQGGGTHPR 161
           +SS   +I T P PP +    +AS  GGG +P+
Sbjct: 124 SSSSARAIPTAPKPPQERLPFSASFVGGGKYPQ 156


>At2g30700.1 68415.m03745 expressed protein
          Length = 480

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 26/87 (29%), Positives = 37/87 (42%)
 Frame = -2

Query: 304 GSLFLNKELVHLLYASKPDKYVPVISTELLRSDANTLFLLVVGPLVSPRGWVPPPCREAV 125
           G++    + V LL+  +    V      L  + A   F  +V  LVS R  +  P   +V
Sbjct: 132 GNVICCPQFVSLLHIFQGQHNVKSNKLVLPDAVATDCFSDIVSILVSRRANMTIPALCSV 191

Query: 124 MSFGLKGGAGVVTILETLELVSQGSAL 44
            S  L GG+  VT + T E V   S L
Sbjct: 192 TSSNLTGGSCPVTDVTTFEKVVNSSKL 218


>At1g23200.1 68414.m02898 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 554

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 214 RSDANTLFLLV-VGPLVSPRGWVP 146
           RS + T+F+   +G LVSP GW+P
Sbjct: 463 RSHSRTVFMKCNLGALVSPAGWLP 486


>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 466 KGGGNLGVTPGAPPFRKG 413
           +GGG   V PGAPP ++G
Sbjct: 239 RGGGGESVVPGAPPPKRG 256


>At5g15400.1 68418.m01802 U-box domain-containing protein contains
           Pfam profile PF04564: U-box domain
          Length = 1038

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 129 ASRQGGGTHPRGLTRGPTTSKKSVFASLRRSSVDITGTYLSGLDA*SKCTSSLFKNSDPP 308
           + +  GG   R   R  +     +FA +   S+D+ G   SG+ A        FK+SD  
Sbjct: 136 SDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGASSSGVQAPPGFLDEFFKDSDFD 195

Query: 309 SL 314
           SL
Sbjct: 196 SL 197


>At3g54210.1 68416.m05992 ribosomal protein L17 family protein
           contains Pfam profile: PF01196 ribosomal protein L17
          Length = 211

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 319 KRSEGGSLFLNKELVHLLYASKPDKY 242
           KR +       K++VH L+A  PD+Y
Sbjct: 157 KRRQALGYIYEKQIVHALFAEVPDRY 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,076
Number of Sequences: 28952
Number of extensions: 246103
Number of successful extensions: 605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)