Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1060
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    36   0.002
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   1.9  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   2.5  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    25   5.8  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    25   5.8  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 147  EEVMAEVDILYMTRVQKERL-DPSEYANVKAQFVL 46
            +EV+A+ D+LY TRVQKER     EY  +K  F++
Sbjct: 2147 KEVVAQSDVLYCTRVQKERFASVDEYEKLKDSFIV 2181


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -3

Query: 207 RCNKVVRSINI*NYF-CIFYLEEVMA----EVDILYMTRVQKERLDPSEYANVKAQFVLR 43
           R NK +R  ++     C F +EE       E D++  T  + E     +  +V++Q+VL 
Sbjct: 449 RINKRIRESSLHGINRCWFVMEEEWVNSKEEEDLITETAQEIEEQRQKQMESVRSQYVLT 508

Query: 42  ASDPCSPGDP 13
             DP +  +P
Sbjct: 509 PLDPIAASEP 518


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 46  KNKLRFHVGVLGRVQTLFLHAGHVQDVYFRHHFFEIENA 162
           K KL   +    R+     HA  V+D +  H++  IENA
Sbjct: 34  KQKLTEQLPTTFRITASIPHATQVRDYFIEHYYPLIENA 72


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 53  NCAFTLAYSDGSRRSFC 103
           NC+FT+ + DGS  + C
Sbjct: 736 NCSFTVIFRDGSEETLC 752


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 168 YFCIFYLEEVMAEVDILYMTRVQKERLDPSEYANVKA 58
           Y C  +L+ ++A VD   +T V+  +L PS+YA + A
Sbjct: 6   YICCLFLKFILANVD---LTFVEYAKL-PSKYAELLA 38


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 127 YFRHHFFEIENAEIILDIDTPDDFITAQKRY 219
           YF     +I    II D++TP+ +++    Y
Sbjct: 170 YFTSQGLQITKKSIIKDVETPESYVSIGLNY 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,959
Number of Sequences: 5004
Number of extensions: 34345
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)