Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1060
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0152 + 1349820-1350107                                           32   0.26 
08_01_0920 - 9065573-9065680,9066330-9066566,9066671-9066844,906...    29   2.5  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    28   3.3  
11_06_0091 + 19967390-19969825                                         28   3.3  
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266...    28   4.3  
08_02_0947 + 22897552-22897614,22898291-22898513,22898599-228988...    27   5.7  
06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407           27   7.5  
07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397...    27   10.0 

>01_01_0152 + 1349820-1350107
          Length = 95

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 36  RWREEQTALSRWRTRTGPDALFARGSCT 119
           RWR E  A +RWR   G  A+   G C+
Sbjct: 40  RWRAEAAAAARWRAEAGHGAMEGGGGCS 67


>08_01_0920 -
           9065573-9065680,9066330-9066566,9066671-9066844,
           9067527-9067666,9069046-9069478
          Length = 363

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 150 LEEVMAEVDILYMTRVQKER 91
           L EV ++ D++Y TR+QKER
Sbjct: 269 LLEVASKCDVIYQTRIQKER 288


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 312 SKSVIPYHYDKECWRD*IFDAIV*LHFVNFSIPFLRCNKVVRSIN 178
           SK    ++Y K  WRD   +AI  L+  NF I      K VR +N
Sbjct: 168 SKRYDVFYYPKSVWRDLTSNAIASLNKKNFRILRGEPRKAVRHLN 212


>11_06_0091 + 19967390-19969825
          Length = 811

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 52  KLRFHVGVLGRVQTLFLHAGHVQDVYFRHHFFEIENAEII 171
           K+   +G+L  ++ L+LH  H+  V    HF  + N + I
Sbjct: 283 KVPSEIGMLTNLKNLYLHNNHLDGVITEKHFARLINLKSI 322


>12_02_0585 +
           20824752-20825954,20826141-20826329,20826533-20826690,
           20826913-20827009,20827368-20827730,20829225-20829303,
           20830180-20830286
          Length = 731

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 169 LFLHFLSRRSDGGSRHPV-HDPRAKRASGPVRVRQRESAVC 50
           L ++ +  RSDGG R P+ H   A   S P   R RE   C
Sbjct: 109 LEINLVHHRSDGGDRPPMCHHYAAMFVSSPSPSRHREEPRC 149


>08_02_0947 +
           22897552-22897614,22898291-22898513,22898599-22898892,
           22899346-22900598
          Length = 610

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 22  RAAGIAGAKNKLRFHVG 72
           RAAG+   + K+RFHVG
Sbjct: 550 RAAGVVHVRGKMRFHVG 566


>06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407
          Length = 473

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 3   LELVDPPGCRDRWREEQTALSRWR 74
           LEL DP G  +RW E   A+ R R
Sbjct: 367 LELEDPVGGAERWAERLAAIPRGR 390


>07_03_1392 -
           26238885-26239007,26239137-26239235,26239636-26239720,
           26239825-26240028,26240360-26240682,26241904-26242575
          Length = 501

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +1

Query: 67  VGVLGRVQTLFLHAGHVQDVYFRHHFFEIENAEIILDIDTPDDF-----ITAQKRYTKIY 231
           V   GR+ TL      +  V+ R  F  ++ A+ +LDI+  +D         +KR T ++
Sbjct: 200 VATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTFLF 259

Query: 232 KM*LNDCVKYLI 267
              ++D ++ L+
Sbjct: 260 SATISDNLRSLL 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,697,923
Number of Sequences: 37544
Number of extensions: 229924
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)