Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1060
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    39   0.002
AJ000538-1|CAA04171.1|  657|Caenorhabditis elegans GluClalpha2A ...    29   2.2  
AJ000537-1|CAA04170.1|  478|Caenorhabditis elegans GluClalpha2B ...    29   2.2  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    27   5.1  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    27   5.1  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      27   5.1  
Z32679-9|CAA83593.3|  337|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 150  LEEVMAEVDILYMTRVQKERL-DPSEYANVKAQFVLRA 40
            L E +  VD++Y+TR+QKER   P EY  VK  +V+ A
Sbjct: 2089 LAEGINHVDVVYVTRIQKERFSSPDEYNKVKGSYVINA 2126


>AJ000538-1|CAA04171.1|  657|Caenorhabditis elegans GluClalpha2A
           protein protein.
          Length = 657

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 58  RFHVGVLGRVQTLFLHAGHVQDVYFRHHFFEIENAEIILDIDTPDDFITAQKRYTKIYKM 237
           R   GV G  Q  FL     Q+++    FF+ EN      ID P+  I   K  T +Y +
Sbjct: 316 RLSFGVKGDAQPDFLILTAGQEIWMPDSFFQNENQAYKHMIDKPNVLIRVHKDGTILYSV 375


>AJ000537-1|CAA04170.1|  478|Caenorhabditis elegans GluClalpha2B
           protein protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 58  RFHVGVLGRVQTLFLHAGHVQDVYFRHHFFEIENAEIILDIDTPDDFITAQKRYTKIYKM 237
           R   GV G  Q  FL     Q+++    FF+ EN      ID P+  I   K  T +Y +
Sbjct: 137 RLSFGVKGDAQPDFLILTAGQEIWMPDSFFQNENQAYKHMIDKPNVLIRVHKDGTILYSV 196


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 117 YMTRVQKERLDPSEYANVKAQFVLRASDPCSPGDPLVLE 1
           Y+T+  +E  + +  AN  A FVL AS   +PGD  +LE
Sbjct: 25  YITKNDEELFNNTSQANKLAAFVLGASKD-APGDEDILE 62


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 117 YMTRVQKERLDPSEYANVKAQFVLRASDPCSPGDPLVLE 1
           Y+T+  +E  + +  AN  A FVL AS   +PGD  +LE
Sbjct: 66  YITKNDEELFNNTSQANKLAAFVLGASKD-APGDEDILE 103


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 117 YMTRVQKERLDPSEYANVKAQFVLRASDPCSPGDPLVLE 1
           Y+T+  +E  + +  AN  A FVL AS   +PGD  +LE
Sbjct: 25  YITKNDEELFNNTSQANKLAAFVLGASKD-APGDEDILE 62


>Z32679-9|CAA83593.3|  337|Caenorhabditis elegans Hypothetical
           protein C05B5.5 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 391 THRCQMRIKITPENYYCQPIYHF-FSFLKISDXXXXX*RVLERLNI*RNRLTTFCKF*YT 215
           ++RCQ R +   +NYY  P   F F+F             L+R  +  ++L  F K  Y+
Sbjct: 99  SNRCQYRQQYDIKNYYENPEEAFLFAFRNALSIFNVQNSKLKRFYLAPSKLELFFKLPYS 158

Query: 214 F 212
           F
Sbjct: 159 F 159


>U80445-1|AAB37794.1|  855|Caenorhabditis elegans Hypothetical
           protein C50F2.3 protein.
          Length = 855

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 439 IKKCEAARNLKAFCE*THRCQMRIKITPENYYC 341
           + KC    + +A C+   RC MR+   P  + C
Sbjct: 90  VNKCPTDNSWRALCDTYERCLMRLHKMPRIWIC 122


>U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical
           protein F48B9.1 protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 115 HDPRAKRASGPVRVRQRESAVCSSRQRSLQPGGSTS 8
           HD  + R  G  RVRQR ++V  +R+++  P  + S
Sbjct: 206 HDDNSLRNVGGHRVRQRVASVSWNREKNYIPAAAKS 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,814,553
Number of Sequences: 27780
Number of extensions: 203721
Number of successful extensions: 482
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)