Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1060
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ...    28   3.6  
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa...    27   4.8  
At3g31540.1 68416.m04025 hypothetical protein                          27   4.8  
At3g20330.1 68416.m02576 aspartate carabmoyltransferase, chlorop...    27   4.8  
At3g57750.1 68416.m06433 protein kinase, putative similar to wal...    27   6.3  
At1g64140.1 68414.m07266 expressed protein similar to putative d...    27   6.3  

>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
           Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
           EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
           contains Pfam profile: ATPase family PF00004
           gene_id:K17E7.100 contains Pfam profile: ATPase family
           PF00004
          Length = 533

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -3

Query: 147 EEVMAEVDILYMTRVQ---KERLDPSEYANVKAQFVLRA 40
           EE +A+ ++  +T  Q   KE L  SEYANV  +++ R+
Sbjct: 472 EEAIADAELAVLTPAQVEDKEELVASEYANVMPEWLPRS 510


>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 508

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  SDGSRRSFCTRVMYRMSTSAITSSR 151
           +DG    FCT     +ST++ITSS+
Sbjct: 333 ADGCAHEFCTNCALYLSTTSITSSK 357


>At3g31540.1 68416.m04025 hypothetical protein
          Length = 699

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +3

Query: 108 GSCTGCLLPP--SLLRDRK 158
           G C GCLLPP  +LL  RK
Sbjct: 485 GKCAGCLLPPLDTLLESRK 503


>At3g20330.1 68416.m02576 aspartate carabmoyltransferase,
           chloroplast / aspartate transcarbamylase / ATCase (PYRB)
           identical to SP|P49077 Aspartate carbamoyltransferase,
           chloroplast precursor (EC 2.1.3.2) (Aspartate
           transcarbamylase) (ATCase) {Arabidopsis thaliana}
          Length = 390

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 150 LEEVMAEVDILYMTRVQKER 91
           L EV ++ D++Y TR+Q+ER
Sbjct: 296 LMEVASKCDVVYQTRIQRER 315


>At3g57750.1 68416.m06433 protein kinase, putative similar to
           wall-associated kinase 1 [Arabidopsis thaliana]
           gi|3549626|emb|CAA08794; contains protein kinase domain,
           Pfam:PF00069
          Length = 334

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 112 HVQDVYFRHHFFEIENAEIILDIDTPDDFITAQKRYTKIYKM*LNDCVKY 261
           HV +V  +  F EI + EI  D+   DD +  + +     ++ L  CV+Y
Sbjct: 263 HVSEVMEKGEFDEIVDKEIWNDLGGDDDLVLRRSQVKAFLRLALR-CVRY 311


>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 24  GCRDRWREEQTALSRWRTRTGPDALFARGSCTGCLLPPSLLRDRK 158
           G R  W + +T  +  ++ +GP   FARG    C L  SL++D +
Sbjct: 509 GKRCAWGQPETEYAG-QSSSGPCTSFARGKTGLCALHNSLVQDNR 552


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,960,626
Number of Sequences: 28952
Number of extensions: 181125
Number of successful extensions: 444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)