Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1059
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   3.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   6.1  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   6.1  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   6.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    24   8.1  

>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 199 FSRQK-WSFPAAIEMAGLCHHPRSIV 273
           ++R+K WS P  +    LC HP S V
Sbjct: 50  WNREKGWSTPEIVPFGKLCFHPASSV 75


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 187 RYCDFSRQKWSFPAAIEMAGLCHH 258
           R CD   Q W F    E+  L HH
Sbjct: 185 RVCDHEIQNWYFEHHTELCLLIHH 208


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 271 RWNEDDDRVPPFQWR 227
           R+NE  +R+PP  WR
Sbjct: 140 RYNEKGERLPPNNWR 154


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 247 VPPFQWRQGSSTFDARSHNIDGTLSSATCLRKLLYPCRRT 128
           + P  +    S+F+ + HN   T  S   LR    PC  T
Sbjct: 17  IDPPSYSPQKSSFEEKKHNFSITNKSLETLRSQESPCSTT 56


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 338 LNNDVYKLQQWHCHW 382
           LN D+Y L+Q++CH+
Sbjct: 462 LNLDLYILKQFYCHY 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,818
Number of Sequences: 5004
Number of extensions: 37645
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)