Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1059
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 31 0.36
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 29 1.1
11_01_0329 + 2471015-2471075,2471152-2471432 29 1.9
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 29 1.9
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570... 29 1.9
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 28 3.4
08_02_0970 - 23140109-23140192,23140604-23140657,23140783-231407... 27 4.5
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129... 27 4.5
07_03_0120 + 13653668-13654384 27 4.5
04_04_0893 - 29152150-29153156,29153234-29153561,29153645-291538... 27 4.5
02_05_0029 - 25194827-25195095,25195129-25197970 27 4.5
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 27 5.9
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 27 5.9
03_03_0251 - 15849211-15851457 27 7.8
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 27 7.8
>09_06_0352 + 22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 31.1 bits (67), Expect = 0.36
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 38 TSKDTDTRVVVSDISKVIMADNEW--GYTCENGPATWIEK 151
T+K+T + VS ISK++ A++ W G N A+WI K
Sbjct: 911 TNKETVAELFVSLISKLLSAESLWEHGLCASNFEASWISK 950
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 5 PVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYT 118
P+ SVD R + S D T V+ D+ KV+ DNEWGY+
Sbjct: 359 PLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYS 400
>11_01_0329 + 2471015-2471075,2471152-2471432
Length = 113
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +2
Query: 104 EWGYTCEN--GPATWIEKFPQAR----GTRQSPVDIVTSRVKSGASLPPL 235
++GY + GP W + P + G +QSP+DIVT + S +L L
Sbjct: 40 DYGYAAGSKLGPENWGKLSPAYKLCGDGKKQSPIDIVTKQAISNPNLDSL 89
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 316 NHSRFRRHANSSQD*RWNEDDDRVPPFQWRQGSSTFDARSH 194
NHS FR+H +S Q D + P W G+S ++ H
Sbjct: 270 NHSMFRKHLSSGQ-------DAKAAPAGWANGASKASSKEH 303
>02_04_0092 +
19655747-19655825,19656362-19656567,19656990-19657096,
19657189-19657291,19657699-19657881,19657972-19658094
Length = 266
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 95 ADNEWGYTCENGPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLK 238
+D +GY+ GP W P ++GT QSP++I+ L PL+
Sbjct: 26 SDVVFGYSGSTGPEHWGSLSPNFTTCSKGTYQSPINILKDDAVYNPKLEPLE 77
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 27.9 bits (59), Expect = 3.4
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = -3
Query: 300 VDTPTVARIDDGTRMMTESRHFNGGREAPLLTREVTISTGLCRVPRA*GNFSIHVAGPFS 121
+D + D G M+ ES R L +E+ RVPR +H +
Sbjct: 877 LDEDLAQQDDHGFCMLPESSSRLQSRVTVHLLKELMGGPIFSRVPRRYCASWVHFSANVY 936
Query: 120 QVYPHSLSAIITLL----MSLTTTRVSV 49
+YP L+ ++T++ + TTT +S+
Sbjct: 937 NIYPMVLTHVLTIIAHQHKTYTTTEISI 964
>08_02_0970 -
23140109-23140192,23140604-23140657,23140783-23140794,
23140842-23141009,23141371-23141473,23141574-23141680,
23143766-23143977,23144136-23144223
Length = 275
Score = 27.5 bits (58), Expect = 4.5
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Frame = +2
Query: 98 DNEWGYT--CENGPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRDSVII 259
+ ++GY ENGP W P+ G QSP+D+ R+ L + D +
Sbjct: 32 ERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHERLMRN-----LGYLDYSYL 86
Query: 260 LVPSSILATVGVSTKTAMIHELKGGPLNNDVYKLQQWHCH 379
+S++ G + + +N YKL+Q H H
Sbjct: 87 PAEASMVNR-GHDIEVKFMGNAGRVVINGKAYKLKQLHWH 125
>07_03_1502 +
27010328-27010509,27010715-27010973,27011989-27012975,
27013388-27013822
Length = 620
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 272 SILATVGVSTKTAMIHELKGGPLNNDV 352
SIL V + +H+LKGGPL N +
Sbjct: 112 SILMLVAATLPFPGVHKLKGGPLRNAI 138
>07_03_0120 + 13653668-13654384
Length = 238
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 212 SGASLPPLKWRDSVIIL---VPSSILATVGVSTKTAM 313
+ S PP +RD ++L V S+LA +G ST T +
Sbjct: 25 ASGSCPPANYRDGAVVLENAVLLSLLAELGASTPTCV 61
>04_04_0893 -
29152150-29153156,29153234-29153561,29153645-29153879,
29154149-29154194,29154579-29154711
Length = 582
Score = 27.5 bits (58), Expect = 4.5
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -3
Query: 306 VFVDTPTVARIDDGTRMMTESRHFNGGREAPLLTR-----EVTISTGLCRVPRA*GNFSI 142
VF++ P V+R+ +T S R + ++ R E T P G+ +
Sbjct: 257 VFINVPCVSRLQWHPFTVTSSSSLEPDRLSVVVKRAGRWTEKLYETISSLPPSQPGHLDV 316
Query: 141 HVAGPFSQVYPHSLSAIITLLM 76
V GP+SQ P S +L+M
Sbjct: 317 SVEGPYSQATPASFLQYDSLVM 338
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 196 DFSRQKWSFPAAIEMAGLCHHPRSIVNPGYC 288
DF + + F A +E HP ++ GYC
Sbjct: 798 DFGQMEREFKAEVETLSKAQHPNLVLLQGYC 828
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 5 PVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYT 118
P+ SVD R + S D + V+ D+ KVI DNEWGY+
Sbjct: 346 PLVSVDFRCSDVSCTIDASLSMVMGDDMVKVIAWYDNEWGYS 387
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 104 EWGYTCENGPATW---IEKFPQ-ARGTRQSPVDIVTSRVKSGASLPPL 235
++GYT GP W F + + G +QSP+DI T+ + ++ PL
Sbjct: 30 KFGYTGSIGPDFWGNLSADFTRCSNGKQQSPIDIDTNNLVHELNMEPL 77
>03_03_0251 - 15849211-15851457
Length = 748
Score = 26.6 bits (56), Expect = 7.8
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = -3
Query: 375 QCHCCNL*TSLLRGPPFNS*IIAVFVDTPTVARIDDGTRMMTESRHFNGGREAPLLTREV 196
Q H C L LLRG F S A+ R+ D R E RH R+ P
Sbjct: 89 QLHACALRLGLLRGDAFAS--GALVHAYLRFGRVRDAYRAFDEMRH----RDVPAWN--- 139
Query: 195 TISTGLCRVPRA 160
+ +GLCR RA
Sbjct: 140 AMLSGLCRNARA 151
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 217 SFPAAIEMAGLCHHPRSIVNPGYCWRVDENGY-DS*IKRWTS 339
S A A CH R + N C D GY + I RW S
Sbjct: 140 SSAAGAAAAATCHQCRRVANTICCTSCDRRGYCTNCISRWYS 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,990
Number of Sequences: 37544
Number of extensions: 275044
Number of successful extensions: 763
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -