Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1059
(413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydr... 45 3e-05
Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical pr... 40 5e-04
U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydr... 39 0.001
Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical pr... 36 0.015
U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydr... 30 0.58
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 3.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 3.1
AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear recep... 27 7.1
AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear horm... 27 7.1
AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear horm... 27 7.1
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 26 9.4
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 26 9.4
>U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydrase
protein 5 protein.
Length = 310
Score = 44.8 bits (101), Expect = 3e-05
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = +2
Query: 95 ADNEWGYTCENGPATWIEKFPQARGTRQSPVDIVTSRVKSGA--SLPPLKW-RDSVIILV 265
+D+ WGY NGP TW K +QSP+DI V + L + D I L
Sbjct: 24 SDHGWGYDENNGPDTWQGKCQNH--LKQSPIDIRAPDVDYALLHRMHFLNYDMDGKIELS 81
Query: 266 PSS-ILATVGVSTKTAMIHELKGGPLNNDVYKLQQWHCHWGALNGEGSEH 412
+ L G + ++GG L + YKL Q+H HWG + GSEH
Sbjct: 82 NTGRTLFAGGFESWQHKQPMIQGGGLKHR-YKLAQFHLHWGQNDAVGSEH 130
>Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical
protein R01E6.3a protein.
Length = 280
Score = 40.3 bits (90), Expect = 5e-04
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Frame = +2
Query: 146 EKFPQARGTRQSPVDIVTSRV-------KSGASLPPLKWRDSVIILVPSSILATVGVSTK 304
+KF +A RQSP+DIV V K+ A K D +LV V+ K
Sbjct: 42 KKFKKAAAQRQSPIDIVPQHVCCDTDVCKADALNIDYKSGDCCDVLVSEGGFL---VNVK 98
Query: 305 TAMIHELKGGPLNNDVYKLQQWHCHWGALNGEGSEH 412
L L + + L Q+H HWG+ + EGSEH
Sbjct: 99 RNCGTFLTANHLPSSKFALAQFHAHWGSNSKEGSEH 134
>U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydrase
protein 3 protein.
Length = 246
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +2
Query: 320 ELKGGPLNNDVYKLQQWHCHWGALNGEGSEH 412
E+ GG L+ VY+L Q+H HWG + EGSEH
Sbjct: 75 EIYGGGLDQ-VYRLVQYHFHWGENDNEGSEH 104
>Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical
protein R01E6.3b protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.015
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = +2
Query: 161 ARGTRQSPVDIVTSRV-------KSGASLPPLKWRDSVIILVPSSILATVGVSTKTAMIH 319
A RQSP+DIV V K+ A K D +LV V+ K
Sbjct: 2 AAAQRQSPIDIVPQHVCCDTDVCKADALNIDYKSGDCCDVLVSEGGFL---VNVKRNCGT 58
Query: 320 ELKGGPLNNDVYKLQQWHCHWGALNGEGSEH 412
L L + + L Q+H HWG+ + EGSEH
Sbjct: 59 FLTANHLPSSKFALAQFHAHWGSNSKEGSEH 89
>U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydrase
protein 1 protein.
Length = 365
Score = 30.3 bits (65), Expect = 0.58
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 287 VGVSTKTAMIHELKGGPLNNDVYKLQQWHCHWGALNGEGSEH 412
+G S+K ++ + GPL Y++Q+ H G N GSEH
Sbjct: 162 IGYSSKKPSVN-ITSGPLYGYRYRVQRIDFHMGRKNENGSEH 202
Score = 29.9 bits (64), Expect = 0.76
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = +2
Query: 62 VVVSDISKVIMADN-EWGYTCE--NGPATW--IEK--FPQARGTRQSPVDIVTSRVKSGA 220
++ IS + + N +W Y + GP W +EK + +G QSP+DI R+ A
Sbjct: 14 ILTCHISPLKSSQNYQWSYDSDVFGGPHFWGLVEKDWWMCKKGRLQSPIDIQPDRLLFDA 73
Query: 221 SLPPLKWRDSVIILV 265
S+ P+ + + L+
Sbjct: 74 SVKPVSYAELNFFLI 88
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 300 VDTPTVARIDDGTRMMTESRH 238
+DTP VA + D R+ T+SRH
Sbjct: 9 IDTPRVASLADMNRLPTQSRH 29
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 300 VDTPTVARIDDGTRMMTESRH 238
+DTP VA + D R+ T+SRH
Sbjct: 9 IDTPRVASLADMNRLPTQSRH 29
>AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear receptor
NHR-58 protein.
Length = 395
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +2
Query: 8 VHSVDTRLTFTSKDTDTRVVVSDISKVIMADNEWGYTCENGPATWIEKFPQARGTRQSPV 187
VH D TSK D R++V ++ + W GP + F + PV
Sbjct: 107 VHFCDPSAPSTSKFIDVRLLVEKGENILKSGPSWTPHMNKGPLFKLANFHNV--FTKMPV 164
Query: 188 DIVTSRVKS 214
++ T+ V S
Sbjct: 165 NMATNNVFS 173
>AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform b protein.
Length = 324
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +2
Query: 8 VHSVDTRLTFTSKDTDTRVVVSDISKVIMADNEWGYTCENGPATWIEKFPQARGTRQSPV 187
VH D TSK D R++V ++ + W GP + F + PV
Sbjct: 36 VHFCDPSAPSTSKFIDVRLLVEKGENILKSGPSWTPHMNKGPLFKLANFHNV--FTKMPV 93
Query: 188 DIVTSRVKS 214
++ T+ V S
Sbjct: 94 NMATNNVFS 102
>AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform a protein.
Length = 393
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +2
Query: 8 VHSVDTRLTFTSKDTDTRVVVSDISKVIMADNEWGYTCENGPATWIEKFPQARGTRQSPV 187
VH D TSK D R++V ++ + W GP + F + PV
Sbjct: 105 VHFCDPSAPSTSKFIDVRLLVEKGENILKSGPSWTPHMNKGPLFKLANFHNV--FTKMPV 162
Query: 188 DIVTSRVKS 214
++ T+ V S
Sbjct: 163 NMATNNVFS 171
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 98 DNEWGYTCENGPATWIEKFPQARGTRQSPVDIVTSRVKSGA 220
+N+WGY+C TW + +A+G + ++ VK+ A
Sbjct: 271 ENDWGYSCF---MTWADIIDEAQGYIRDDTVVLEIAVKAEA 308
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 98 DNEWGYTCENGPATWIEKFPQARGTRQSPVDIVTSRVKSGA 220
+N+WGY+C TW + +A+G + ++ VK+ A
Sbjct: 271 ENDWGYSCF---MTWADIIDEAQGYIRDDTVVLEIAVKAEA 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,288,945
Number of Sequences: 27780
Number of extensions: 219248
Number of successful extensions: 513
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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