Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1059
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   3.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 179 SPVDIVTSRVKSGASLPPLKWRDSV 253
           S + + T   KS ASLPP+ +  +V
Sbjct: 283 SLLTLSTQHAKSQASLPPVSYLKAV 307


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 359 LQQWHCHWGAL 391
           +QQW+ +WG L
Sbjct: 333 VQQWNSYWGIL 343


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 359 LQQWHCHWGAL 391
           +QQW+ +WG L
Sbjct: 333 VQQWNSYWGIL 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,275
Number of Sequences: 438
Number of extensions: 2731
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)