Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1059
(413 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44940.1 68415.m05594 AP2 domain-containing transcription fac... 30 0.71
At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas... 30 0.71
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 29 0.94
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas... 29 1.6
At1g08065.1 68414.m00882 carbonic anhydrase family protein simil... 28 2.2
At5g06920.1 68418.m00782 hypothetical protein 28 2.9
At4g14815.1 68417.m02278 protease inhibitor/seed storage/lipid t... 28 2.9
At5g26090.1 68418.m03104 hypothetical protein 27 5.0
At4g37160.1 68417.m05261 multi-copper oxidase type I family prot... 27 6.6
At1g65020.1 68414.m07369 expressed protein 26 8.7
At1g63580.1 68414.m07187 protein kinase-related 26 8.7
>At2g44940.1 68415.m05594 AP2 domain-containing transcription factor
TINY, putative similar to transcription factor TINY
(GI:1246403) [Arabidopsis thaliana]; contains pFAM
domain (PF00847)
Length = 295
Score = 29.9 bits (64), Expect = 0.71
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 152 FPQARGTRQSPVDIVTSRVKSGASLPPLKWRDSVIILVPSSILATVGVSTKTAMIHEL 325
FP+ G PV +++ ASL + W+DSV + S + V A++ +L
Sbjct: 155 FPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEIVEAEPSRAVVAQL 212
>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
chloroplast, putative / NADP-dependent
glyceraldehydephosphate dehydrogenase, putative similar
to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
chloroplast precursor (EC 1.2.1.13) (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 399
Score = 29.9 bits (64), Expect = 0.71
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 5 PVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYT 118
P+ SVD R + S D T V+ D+ KVI DNEWGY+
Sbjct: 343 PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYS 384
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 29.5 bits (63), Expect = 0.94
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 2 SPVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYT 118
+P+ SVD R + S D T V+ D+ KV+ DNEWGY+
Sbjct: 362 APLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYS 404
>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
A, chloroplast (GAPA) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A
identical to SP|P25856 Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit A) {Arabidopsis thaliana}
Length = 396
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 5 PVHSVDTRLTFTSKDTD---TRVVVSDISKVIM-ADNEWGYT 118
P+ SVD R + S D T V+ D+ KVI DNEWGY+
Sbjct: 340 PLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYS 381
>At1g08065.1 68414.m00882 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 263
Score = 28.3 bits (60), Expect = 2.2
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Frame = +2
Query: 122 ENGPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRDSVIILVPSSILATV 289
E GP W P+ +G QSP+D+ RV +L L+ + +PS+ AT+
Sbjct: 28 EKGPENWGRLKPEWAMCGKGNMQSPIDLTDKRVLIDHNLGYLRSQ-----YLPSN--ATI 80
Query: 290 GVSTKTAMIHELKGG------PLNNDVYKLQQWHCH 379
M+ + +GG +N YKLQQ H H
Sbjct: 81 KNRGHDIMM-KFEGGNAGLGITINGTEYKLQQIHWH 115
>At5g06920.1 68418.m00782 hypothetical protein
Length = 353
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 144 IH-VAGPFSQVYPHSLSAIIT-LLMSLTTTRVSVSFEVNV 31
IH V GPFS + PHS I T L S TT + S + EV V
Sbjct: 171 IHGVIGPFSPLQPHSDHLIHTPLCQSDTTNKTSNNEEVPV 210
>At4g14815.1 68417.m02278 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 156
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 309 AVFVDTPTVARIDDGTRMMTESRHFNGGREAPLLTREVTISTG 181
A V+TP +R G+ + + S H NG + P RE + S G
Sbjct: 92 ACHVETPPASRCHSGSSVNSHSEHGNGSKTVP---REKSSSDG 131
>At5g26090.1 68418.m03104 hypothetical protein
Length = 401
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 47 DTDTRVVVSDISKVIMADNEWGYTCENGPATWIEKFPQAR 166
DT T +VVS+ + N G+ C +GP W + P R
Sbjct: 18 DTVTHIVVSNELYGLKKGNA-GFVCSHGPKKWRQSKPGDR 56
>At4g37160.1 68417.m05261 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 541
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 254 IILVPSSILATVGVSTKTAMIHELKGGPLNNDVYKLQQWH 373
II P++ A +G S +HE ND +Q WH
Sbjct: 400 IISTPTTGPAHIGTSVIDVELHEFVEIVFQNDERSIQSWH 439
>At1g65020.1 68414.m07369 expressed protein
Length = 319
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +2
Query: 20 DTRLTFTSKDTDTRVVVSDISKVIMADNEWGYTCENGPATWIEKFPQARGTRQSPVDIVT 199
D + +K + V ++S ++ ++ + CE G E FP + ++
Sbjct: 66 DIDVVLVTKGDVVVISVKNLSGIVTVTSDGSWVCEGGKHHTTETFPDPLAEVKKQASVLE 125
Query: 200 SRVKS-GASLPPLKWRDSVIILVPSSILATVGVSTKTAMIHE 322
S ++ G +L L+ S +++P+ T+ + +E
Sbjct: 126 SYLEQRGVTL--LEGNVSCKVVIPNPSFRTIHAFPSEVITYE 165
>At1g63580.1 68414.m07187 protein kinase-related
Length = 273
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 8 VHSVDTRLTFTSKDTDTRVVVSDISKVIMADNEWGYTCENGPATW 142
VHS + + + DT + SD V +DN + E+ PAT+
Sbjct: 89 VHSATLEMDKSCESHDTSFMFSDECMVRYSDNSFFSLVEDSPATF 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,821,553
Number of Sequences: 28952
Number of extensions: 210217
Number of successful extensions: 618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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