Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1058
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.29 
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    23   1.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   3.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.6  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    20   8.3  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 398
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +2

Query: 245 EMRPEQKRY-PDPQIPHRTRNRH 310
           E  P   ++ PD  +P RT NRH
Sbjct: 100 EYYPNPDKFDPDNFLPERTANRH 122


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 387 RGVPRGRHAAHCRRYDAKSSP 325
           RG P    AA C +   KS P
Sbjct: 33  RGTPLAMLAAQCNKLSNKSPP 53


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 341 MPNLLHVIPVSDDSVFD 291
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 341 MPNLLHVIPVSDDSVFD 291
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 341 MPNLLHVIPVSDDSVFD 291
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 341 MPNLLHVIPVSDDSVFD 291
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 273 GYLFCSGLISY 241
           GYLFC+ L  Y
Sbjct: 71  GYLFCASLSFY 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,010
Number of Sequences: 336
Number of extensions: 2153
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)