Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1058
(413 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 186 9e-49
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 3e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 88 6e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 60 1e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 4e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 1e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 2e-05
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.7
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.1
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 6.1
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 25 6.1
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 7.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 8.1
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 186 bits (454), Expect = 9e-49
Identities = 86/109 (78%), Positives = 89/109 (81%)
Frame = +3
Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSK 263
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH QSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 264 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPL
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPL 110
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (252), Expect = 3e-24
Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKRGILTL 281
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H Q+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 282 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 410
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 87.8 bits (208), Expect = 6e-19
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Frame = +3
Query: 90 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHXXXXXXXXXXXXXCRR*GQSK 263
E A +V+DNG+G K G+A D+ PR FPSIVGRP R ++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 264 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPM 110
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 60.5 bits (140), Expect = 1e-10
Identities = 34/105 (32%), Positives = 52/105 (49%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
+EV+A+V+D GS + GF+G+D P+ V PS G +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFGEEYIY-------KSNP 61
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 401
G + +K I +G V NWD +W + +L+ P EHP+L+TE
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE 105
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.4 bits (135), Expect = 4e-10
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 276 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PL
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPL 133
Score = 40.7 bits (91), Expect = 9e-05
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 185
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 53.6 bits (123), Expect = 1e-08
Identities = 32/100 (32%), Positives = 50/100 (50%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKRGILTL 281
LV+DNGS +AG+ G+ P+ VF ++V R R R I
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTSTLVGNDTLI-EVGSRSIA-- 83
Query: 282 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 401
+ P E +++NWD ME++ +TF +L + EHP+ +TE
Sbjct: 84 RSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTE 122
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 42.7 bits (96), Expect = 2e-05
Identities = 25/105 (23%), Positives = 47/105 (44%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
EE+ +LV+D GS + G+AG+++P + PS G +
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRNKYVVDELQI----HAPI 63
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 401
+ +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 64 PGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 217 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 83
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 223 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 131
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTF 350
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAG 149
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 296 FDGVFEGQDTSFALASSPT*ESLLSHTDHHALMAGPSHD 180
F F+ + +F AS+P L+ H PSHD
Sbjct: 220 FPSSFDQSNYNFQAASTPQFNPLIEHLRRSNSPLNPSHD 258
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 6.1
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 407 GSLSKQDGVFLGGDTQLIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFA 258
G + GVF GD ++ PN VI D D F D SF+
Sbjct: 258 GRMLVSKGVFTTGDICKVLRKEFPNKSDVIAEPVDITVDPSFFKLDNSFS 307
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 7.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 270 ILTLKYPIEHGIVTN 314
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 7.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 309 TNWDDMEKIWHHTFYNELRVAPEEHP 386
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.2 bits (50), Expect = 8.1
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -1
Query: 305 DSVFDGVFEGQDTSFALASSPT*ESLLSHTDHHALMAGPSHDRGKHCARSIISCEAGLAH 126
D + D + + ++TS AS P + L + D+ + + D K SI++C
Sbjct: 1219 DILNDSITDMENTSSFTASFPQSDQALQYFDNFTVQYAEAKDVIKGLLFSILTCIYNRIT 1278
Query: 125 TGAIVYYQR 99
+G Y R
Sbjct: 1279 SGQGFSYSR 1287
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 8.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 134 LAHTGAIVYYQRGNFFVAHLELVF 63
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,703
Number of Sequences: 5004
Number of extensions: 35737
Number of successful extensions: 116
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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