BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1058 (413 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56628| Best HMM Match : Actin (HMM E-Value=0) 196 6e-51 SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 1e-49 SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 1e-49 SB_56| Best HMM Match : Actin (HMM E-Value=0) 190 4e-49 SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 189 9e-49 SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 5e-33 SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 2e-16 SB_54| Best HMM Match : Actin (HMM E-Value=0) 59 1e-09 SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 58 4e-09 SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 48 4e-06 SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 1e-05 SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 42 2e-04 SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.030 SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 34 0.053 SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28 SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.28 SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.66 SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1 SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8) 29 1.1 SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9) 29 2.0 SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 29 2.0 SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6 SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6 SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6 SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 4.6 SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1 SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 6.1 SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1 SB_14707| Best HMM Match : A_deamin (HMM E-Value=0) 27 8.1 SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1 >SB_56628| Best HMM Match : Actin (HMM E-Value=0) Length = 376 Score = 196 bits (478), Expect = 6e-51 Identities = 91/111 (81%), Positives = 93/111 (83%) Frame = +3 Query: 78 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQ 257 MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH Q Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 258 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111 >SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 376 Score = 192 bits (467), Expect = 1e-49 Identities = 90/111 (81%), Positives = 92/111 (82%) Frame = +3 Query: 78 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQ 257 M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH Q Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 258 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111 >SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 349 Score = 192 bits (467), Expect = 1e-49 Identities = 88/111 (79%), Positives = 92/111 (82%) Frame = +3 Query: 78 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQ 257 M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH Q Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 258 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111 >SB_56| Best HMM Match : Actin (HMM E-Value=0) Length = 375 Score = 190 bits (463), Expect = 4e-49 Identities = 89/109 (81%), Positives = 91/109 (83%) Frame = +3 Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSK 263 ++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH QSK Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Query: 264 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110 >SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 375 Score = 189 bits (460), Expect = 9e-49 Identities = 88/109 (80%), Positives = 91/109 (83%) Frame = +3 Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSK 263 +++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH QSK Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Query: 264 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110 >SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 136 bits (330), Expect = 5e-33 Identities = 65/89 (73%), Positives = 68/89 (76%) Frame = +3 Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSK 263 D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH QSK Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Query: 264 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 350 RGILTLKYPIEHGIVTNWDDMEKI TF Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90 >SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 81.8 bits (193), Expect = 2e-16 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 3/108 (2%) Frame = +3 Query: 96 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHXXXXXXXXXXXXXCRR*GQSKRG 269 + +V DNG+G K G+AG + P +FPS+VGRP R R Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66 Query: 270 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPL 410 +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PL Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPL 114 >SB_54| Best HMM Match : Actin (HMM E-Value=0) Length = 2486 Score = 59.3 bits (137), Expect = 1e-09 Identities = 23/33 (69%), Positives = 29/33 (87%) Frame = +3 Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 200 +V+DNGSG CKAG + D++PR VFP+IVGRPRH Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRH 2129 Score = 37.5 bits (83), Expect = 0.004 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = +3 Query: 330 KIWHHTFYNELRVAPEEHPVLLTEAPL 410 K+W H F ++LRV E+ PVLLTEAPL Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPL 2155 >SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) Length = 1392 Score = 57.6 bits (133), Expect = 4e-09 Identities = 26/38 (68%), Positives = 28/38 (73%) Frame = +3 Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 200 E LV+D GS M K GFAGDDAP+ VFP IVGRPRH Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRH 1391 >SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) Length = 921 Score = 47.6 bits (108), Expect = 4e-06 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = +3 Query: 72 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 197 FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQ 734 >SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) Length = 372 Score = 46.0 bits (104), Expect = 1e-05 Identities = 18/38 (47%), Positives = 23/38 (60%) Frame = +3 Query: 282 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 395 K+PI H IV +WD ME+ W + LR PE+H LL Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336 >SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) Length = 580 Score = 41.9 bits (94), Expect = 2e-04 Identities = 25/90 (27%), Positives = 42/90 (46%) Frame = +3 Query: 90 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKRG 269 ++A LV+D G+ K GFA + APR++ P+ + + + C+ Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSERRKLFIGDQIEECK-----DYS 285 Query: 270 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNE 359 L P + G + NWD ++IW +TF E Sbjct: 286 ALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315 >SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 198 Score = 34.7 bits (76), Expect = 0.030 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = -1 Query: 200 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 84 MA + D G++ + SI+S E GLAHTGAI+ Q + V Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39 >SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) Length = 240 Score = 33.9 bits (74), Expect = 0.053 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +3 Query: 288 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 404 PI+ G++ +WD EKI + + ++ HP+L++EA Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEA 41 >SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 120 Score = 31.5 bits (68), Expect = 0.28 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -2 Query: 175 GNTARGASSPAKPALHIPEPLSTT 104 GNT R PAKPAL++P P S T Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103 >SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) Length = 170 Score = 31.5 bits (68), Expect = 0.28 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -2 Query: 175 GNTARGASSPAKPALHIPEPLSTT 104 GNT R PAKPAL++P P S T Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103 >SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 749 Score = 30.3 bits (65), Expect = 0.66 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 175 GNTARGASSPAKPALHIPEPLSTT 104 GNT R PAKP+L++P P S T Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563 >SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 334 Score = 29.5 bits (63), Expect = 1.1 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -2 Query: 310 VTIPCSMGYLRVRIPLLLWPHLLHKSPYCP 221 V PC M L VR+ W +LH CP Sbjct: 73 VVCPCCMSVLHVRVACPCWVSVLHVRVVCP 102 Score = 26.6 bits (56), Expect = 8.1 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -2 Query: 310 VTIPCSMGYLRVRIPLLLWPHLLHKSPYCP 221 V PC M LRVR+ W +L CP Sbjct: 34 VACPCCMSLLRVRVVCPCWVSVLGVRVACP 63 >SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8) Length = 436 Score = 29.5 bits (63), Expect = 1.1 Identities = 17/64 (26%), Positives = 31/64 (48%) Frame = -1 Query: 278 GQDTSFALASSPT*ESLLSHTDHHALMAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQR 99 GQ+ F+LASS S+ + D + +M G S D + S + + A+T + Q+ Sbjct: 107 GQERPFSLASSQKVASIKAKVDLNVVMQGKSIDGDRMSKASSVQSKPAQANTVPLCSLQK 166 Query: 98 GNFF 87 ++ Sbjct: 167 NGYW 170 >SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9) Length = 253 Score = 28.7 bits (61), Expect = 2.0 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 269 TSFALASSPT*ESLLSHTDHHALMAGPSHDRGKHCARSIIS 147 T + SPT + SHTDHH L + H+ H ++S Sbjct: 173 TLTTILQSPTDHHVQSHTDHHVL-SNTDHNVQSHTDHHVLS 212 >SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) Length = 927 Score = 28.7 bits (61), Expect = 2.0 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -2 Query: 292 MGYLRVRIPLLLWPHLLHKSPYCPIPTITP*WRGLPTIEGNTARGASSPAKPALHI 125 MGY+ ++ P +W L P PT+TP PT+ +T + A P L + Sbjct: 363 MGYVVIKAPYPVWTLLSSTPTITPTPTVTP--TPTPTVSLSTHILVVAVAVPILFL 416 >SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 130 Score = 28.3 bits (60), Expect = 2.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 175 GNTARGASSPAKPALHIPEPLSTT 104 GNT R AKPAL++P P S T Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63 >SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 635 Score = 28.3 bits (60), Expect = 2.6 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 175 GNTARGASSPAKPALHIPEPLSTT 104 GNT R PAKP L IP P + T Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91 >SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 285 Score = 27.5 bits (58), Expect = 4.6 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -2 Query: 190 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 80 L IE + A++P P + +P+ + +AAT +SH Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258 >SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) Length = 1225 Score = 27.5 bits (58), Expect = 4.6 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -3 Query: 195 GAFPRSRETLREEHHLLRSRPCTYRS 118 G +P S++T R E + +RPCT S Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857 >SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 220 Score = 27.1 bits (57), Expect = 6.1 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +3 Query: 279 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTE 401 L+ P + +VT+++ E++ H F + P HPV++TE Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTE 173 >SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) Length = 766 Score = 27.1 bits (57), Expect = 6.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +3 Query: 96 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 200 + +++D GS KAGFA ++A + + S++G H Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516 >SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1702 Score = 27.1 bits (57), Expect = 6.1 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -2 Query: 328 SMSSQLVTIPCSMGYLRVRIPLLLW-PHLLHKSPYCPIPTIT 206 S S L+ + + R I W P L+ S YCPIP I+ Sbjct: 1005 SEMSVLIKVVAQLAECRCAIDSHRWVPGLIPGSDYCPIPAIS 1046 >SB_14707| Best HMM Match : A_deamin (HMM E-Value=0) Length = 1243 Score = 26.6 bits (56), Expect = 8.1 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = -1 Query: 287 VFEGQDTSFALASSPT*ESLLSHTDHHALMAGPSHDRGKHCARSIISC---EAGLAHTGA 117 VF Q + +L+ T L++ HHA + + K R +++C +A L +G Sbjct: 845 VFLSQPSPGSLSGVRTHFDLIAALAHHAFLQIAASIPDKFAGRKVVACIIMKASLEDSGR 904 Query: 116 IVYYQRGN 93 +V GN Sbjct: 905 VVSLGAGN 912 >SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1077 Score = 26.6 bits (56), Expect = 8.1 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = +3 Query: 75 KMCDEEVAALVVDNG-SGMCKAGFAGD 152 ++CD++ + +N MCKAG+ GD Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,279,042 Number of Sequences: 59808 Number of extensions: 324012 Number of successful extensions: 863 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 778 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 848 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 764823134 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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