Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1058
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.6  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 123 GMCKAGFAGD 152
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 349 STMSCVSPPRNTP 387
           S ++C  PPR TP
Sbjct: 388 SCVACSPPPRQTP 400


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 261 CSGLISYIRVLTVP 220
           C+G   Y+R+L VP
Sbjct: 168 CTGYQQYLRLLEVP 181


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/30 (30%), Positives = 11/30 (36%)
 Frame = -1

Query: 212 HHALMAGPSHDRGKHCARSIISCEAGLAHT 123
           HH+  A P H      A S       + HT
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 122 GAIVYYQRGNFFVAHLELVF 63
           G +VY   G+F++  L ++F
Sbjct: 246 GYVVYSALGSFYIPMLVMLF 265


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 155  IISCEAGLAHTGAIVY 108
            +I   AGL  TGA VY
Sbjct: 1258 VIPTPAGLKTTGAAVY 1273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,799
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)