Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1058
(413 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 176 6e-45
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 176 6e-45
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 175 7e-45
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 175 7e-45
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 175 1e-44
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 175 1e-44
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 173 5e-44
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 173 5e-44
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 173 5e-44
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 167 3e-42
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 135 1e-32
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 103 5e-23
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 97 4e-21
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 65 2e-11
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 60 8e-10
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 57 5e-09
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 56 7e-09
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 42 1e-04
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.044
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 31 0.41
At4g16670.1 68417.m02518 expressed protein 29 1.6
At1g16690.2 68414.m01999 transcription factor-related similar to... 28 2.9
At1g16690.1 68414.m01998 transcription factor-related similar to... 28 2.9
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 3.8
At3g12650.1 68416.m01575 expressed protein 27 5.0
At5g59280.1 68418.m07428 pumilio/Puf RNA-binding domain-containi... 27 6.6
At3g48860.2 68416.m05337 expressed protein 26 8.7
At3g48860.1 68416.m05336 expressed protein 26 8.7
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 26 8.7
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 176 bits (428), Expect = 6e-45
Identities = 82/108 (75%), Positives = 86/108 (79%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH QSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 176 bits (428), Expect = 6e-45
Identities = 82/108 (75%), Positives = 86/108 (79%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH QSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 175 bits (427), Expect = 7e-45
Identities = 82/108 (75%), Positives = 85/108 (78%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH QSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 175 bits (427), Expect = 7e-45
Identities = 82/108 (75%), Positives = 85/108 (78%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH QSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 112
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 175 bits (426), Expect = 1e-44
Identities = 81/108 (75%), Positives = 85/108 (78%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH QSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPL
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPL 112
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 175 bits (426), Expect = 1e-44
Identities = 81/108 (75%), Positives = 85/108 (78%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH QSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPL
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPL 112
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 173 bits (420), Expect = 5e-44
Identities = 77/108 (71%), Positives = 86/108 (79%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH QSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPL
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPL 112
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 173 bits (420), Expect = 5e-44
Identities = 77/108 (71%), Positives = 86/108 (79%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH QSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPL
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPL 112
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 173 bits (420), Expect = 5e-44
Identities = 77/108 (71%), Positives = 86/108 (79%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH QSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPL
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPL 112
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 167 bits (406), Expect = 3e-42
Identities = 74/108 (68%), Positives = 85/108 (78%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH Q++R
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 267 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
GIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+LLTEAPL
Sbjct: 66 GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPL 113
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 135 bits (327), Expect = 1e-32
Identities = 64/102 (62%), Positives = 72/102 (70%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKRGILTL 281
+V D G GM +AGFAGD+AP+ VFP +VGRPR G + R ILTL
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRDGLNPNESYVGEE-----GHANRDILTL 58
Query: 282 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 407
K P+EHGIV NWDDMEKIWH+TFYNELRV PEEHPVLLTEAP
Sbjct: 59 KDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAP 100
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 103 bits (247), Expect = 5e-23
Identities = 42/52 (80%), Positives = 50/52 (96%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
+++ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPVLLTEAPL
Sbjct: 16 EARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPL 67
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 97.1 bits (231), Expect = 4e-21
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHXXXXXXXXXXXXXCRR*GQSKRGIL 275
+V DNG+G K GFAG++ P +VFP +VGRP R+ R L
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQL 66
Query: 276 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
+ YP+ +GIV NWDDME +W H FYNEL++ P + +LLT+ PL
Sbjct: 67 DINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPL 111
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 64.9 bits (151), Expect = 2e-11
Identities = 44/125 (35%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKR 266
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG + ++
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEK 64
Query: 267 GILTLKYPIEHGIVTNWDDME-----------------KIWHHTFYNELRVAPEEHPVLL 395
G L Y + D ME +W H F N L + P EHP+LL
Sbjct: 65 GKRKL-YTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLL 123
Query: 396 TEAPL 410
E PL
Sbjct: 124 AEPPL 128
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 59.7 bits (138), Expect = 8e-10
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +3
Query: 279 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
L YPIEHG V +WD ME+ W +N LR PE+H LLTE+PL
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPL 129
Score = 35.9 bits (79), Expect = 0.011
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 99 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 185
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 56.8 bits (131), Expect = 5e-09
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 188
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 53.2 bits (122), Expect = 7e-08
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 261 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
+R + + PI+ GIV++WD ++ IW H F + L + P EHP+LL E PL
Sbjct: 85 RRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPL 134
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 56.4 bits (130), Expect = 7e-09
Identities = 32/103 (31%), Positives = 48/103 (46%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKRGILTL 281
+V+DNG G+ KAG G+ P V P+ + +P + +
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTTLSDEIDLTSAAV--- 61
Query: 282 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 410
+ PI+ G + N D +IW H F + L +AP +LLTEAPL
Sbjct: 62 RRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPL 104
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 200
+V+DNG+ + G+AG+ PR VF +IV RPRH
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRH 54
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.044
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -2
Query: 223 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 86
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 30.7 bits (66), Expect = 0.41
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +3
Query: 99 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHXXXXXXXXXXXXXCRR*GQSKRGIL 275
ALVVD GS KAG A D +P + PS + R +
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVF---------EDV 53
Query: 276 TLKYPIEHGIVTNWDDMEKIWHHTFYNEL 362
TL PIE G++ +WD ME + + Y L
Sbjct: 54 TLD-PIERGLIRDWDAMEDLLRYVVYTGL 81
>At4g16670.1 68417.m02518 expressed protein
Length = 429
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/48 (43%), Positives = 24/48 (50%)
Frame = -1
Query: 293 DGVFEGQDTSFALASSPT*ESLLSHTDHHALMAGPSHDRGKHCARSII 150
DG F G S ALAS+ E L SH A +AG HDR RS +
Sbjct: 186 DG-FAGSKMSSALASAS--ELLASHCLELAELAGADHDRVVSAVRSAV 230
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 273 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 374
L++KY + H I + W + +IW L+ P
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 273 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 374
L++KY + H I + W + +IW L+ P
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 199 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 77
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At3g12650.1 68416.m01575 expressed protein
Length = 238
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 413 LEGSLSKQDGVFLGGDTQLIVEGMMPNL 330
+EG ++D LG +T+ ++EGMM N+
Sbjct: 99 IEGPTVERDLSALGNETRQVLEGMMKNM 126
>At5g59280.1 68418.m07428 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806: Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain)
Length = 332
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 340 CQIFSMSSQLVTIPCSMGYLRVRIPLLLWPHLLHKSPYCPIPTI 209
C+ ++++++T G + +P + HLLH+SP I TI
Sbjct: 284 CKALELTNEILTADLFYGLVNRLMP---YRHLLHRSPRSKIATI 324
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 178 EGNTARGASSPAKPALHIPEPLSTTNAATSSSH 80
E + R AS+ KPA H P +S+T + +S+ +
Sbjct: 82 EDLSLRFASASLKPARHAPSSISSTGSNSSNGN 114
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 178 EGNTARGASSPAKPALHIPEPLSTTNAATSSSH 80
E + R AS+ KPA H P +S+T + +S+ +
Sbjct: 82 EDLSLRFASASLKPARHAPSSISSTGSNSSNGN 114
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 199 WRGLPTIEGNTARGASSPAKPA--LHIPEPL 113
WR + T G + +SSP KP LH P+
Sbjct: 55 WRSVLTQHGRLSSSSSSPTKPCLLLHCDSPI 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,702,572
Number of Sequences: 28952
Number of extensions: 209628
Number of successful extensions: 594
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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