Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1056
         (562 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    87   2e-16
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    36   0.85 
UniRef50_Q89HG1 Cluster: Bsl6030 protein; n=1; Bradyrhizobium ja...    34   2.0  
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    34   2.6  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 87.4 bits (207), Expect = 2e-16
 Identities = 40/44 (90%), Positives = 41/44 (93%)
 Frame = +1

Query: 43   DELPSTVFRERYDTSFFKRGLWRVLSSRQRLGSAPGIAEVHGRR 174
            +ELPSTVF ERYD SFFKRGLWRVLS RQRLGSAPGIAEVHGRR
Sbjct: 943  NELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 35.5 bits (78), Expect = 0.85
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 242 NVFFYLLPL*ADERTAHLIVSGYRRPWTSAMPGAEPSRCLLLNTLH 105
           + F + +      +T +L+   +R  WTS +PGA+P    L+N  H
Sbjct: 23  DTFIFQIKFSCFRQTIYLVDDNHRHSWTSTIPGAQPDHRCLVNLRH 68


>UniRef50_Q89HG1 Cluster: Bsl6030 protein; n=1; Bradyrhizobium
           japonicum|Rep: Bsl6030 protein - Bradyrhizobium
           japonicum
          Length = 93

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -2

Query: 195 PSDCKWLPSPMDFSNARSRAKPL----PTA*YSPQASFEEGRVIALAKHRGGEL 46
           PSDC   P P  F++  +R++P      T    P   FE G  + L  H GGEL
Sbjct: 19  PSDCLISPPPNQFTHEVARSQPFYASRGTPSGPPTGQFEAGARVVLLYHDGGEL 72


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +2

Query: 164 MGDGNHLQSDGPYARLPTKA 223
           MGDGNH  S  PYA LPT+A
Sbjct: 1   MGDGNHSPSGRPYASLPTRA 20


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,621,362
Number of Sequences: 1657284
Number of extensions: 7818820
Number of successful extensions: 16906
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16903
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)