Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1056
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    27   9.2  

>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 213 GRRAYGPSDCKWLPSPMDFSNAR--SRAKPLP 124
           G   Y PS  +  P PMD+SN R  S   P+P
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNRRNSNLTPMP 841


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 213 GRRAYGPSDCKWLPSPMDFSNAR--SRAKPLP 124
           G   Y PS  +  P PMD+SN R  S   P+P
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNRRNSNLTPMP 841


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 421 FGIKIYLNFFDSISLSVN-ILTKILNLIGTNY*Q 519
           + + + L+ FD +SLSVN + T I ++IG ++ Q
Sbjct: 69  YQLMLVLSIFDILSLSVNSVATGIFDIIGISFCQ 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,548,559
Number of Sequences: 27780
Number of extensions: 180017
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)