Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1053
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9675| Best HMM Match : Notch (HMM E-Value=0.27)                     36   0.021
SB_24732| Best HMM Match : Notch (HMM E-Value=0.21)                    34   0.083
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)                     30   1.4  
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)                      29   3.1  
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)                     28   5.5  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 28   7.2  
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              27   9.6  

>SB_9675| Best HMM Match : Notch (HMM E-Value=0.27)
          Length = 223

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 21  SWCQTNCLRYPPNCPEALCSC 83
           SWCQ  C   PPNCP   C+C
Sbjct: 156 SWCQQECDHIPPNCPFENCAC 176


>SB_24732| Best HMM Match : Notch (HMM E-Value=0.21)
          Length = 223

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 24  WCQTNCLRYPPNCPEALCSC 83
           WCQ  C   PPNCP   C+C
Sbjct: 157 WCQQECDHNPPNCPFENCAC 176


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 12  GMLSWCQTNCLRYPPNCPEALCSC 83
           GM SWC  NC     NCP  +C C
Sbjct: 785 GMDSWCVNNCAL--GNCPPTICVC 806


>SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)
          Length = 600

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 98  YMHFIIFIFLLNIRWAVSSSTHLSNXXXXXXXXMHNPVKLRA 223
           + +++ FIF++ + W ++  +HLS         MH  V+L A
Sbjct: 113 FFYYVPFIFIMQVGWGITQISHLS-LIPVIAGRMHGKVELNA 153


>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
          Length = 406

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +3

Query: 24  WCQTNCL-RYPPNCPEALCSC 83
           WCQ  C    PPNC   +C+C
Sbjct: 281 WCQQQCYSNRPPNCYFEICAC 301


>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
          Length = 1165

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 315  YFAHLWYKTGSHVTGGIHIMCEPW 244
            YFA    + G HVTGGI+ M  P+
Sbjct: 1007 YFAGQRAELGGHVTGGIYTMWRPY 1030


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 9   PGMLSWCQTNCLRYPPNCPEALCS 80
           PG LSW +    R PP CP   C+
Sbjct: 71  PGCLSWRRRRRRRRPPPCPPRNCA 94


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 9   PGMLSWCQTNCLRYPPNCPEALCSC 83
           PGM +WCQ+ C     +CP   C C
Sbjct: 546 PGMDAWCQSMC--GLGHCPATHCKC 568


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,146,971
Number of Sequences: 59808
Number of extensions: 405306
Number of successful extensions: 853
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)