Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1053
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ...    28   5.9  
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ...    28   5.9  
At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+ antipo...    27   7.8  

>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 817

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 500 HQSNTSVLLNLRTYWDNI 553
           H  NT  LL+L TYW N+
Sbjct: 444 HMQNTDSLLHLHTYWANL 461


>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 816

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 500 HQSNTSVLLNLRTYWDNI 553
           H  NT  LL+L TYW N+
Sbjct: 444 HMQNTDSLLHLHTYWANL 461


>At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+
           antiporter (NHX1) identical to Na+/H+ exchanger
           [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium
           proton exchanger Nhx1 [Arabidopsis thaliana]
           gi|4324597|gb|AAD16946; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 538

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 294 CTINEQNNGKHPLGLTMRHTTTL*LNKLSLCLFFITQRFLIVHVNYELVFH 446
           CT+   N  + PL  ++     +  +  S+ +F   Q F + H+N+E  FH
Sbjct: 160 CTLQVLNQDETPLLYSLVFGEGVVNDATSVVVFNAIQSFDLTHLNHEAAFH 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,382
Number of Sequences: 28952
Number of extensions: 276170
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)