Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1050
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   1.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   3.4  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   5.9  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 8   LIHLIPL*CYRMYFLFVYYLF 70
           L+ L+ + CY +Y   VYY++
Sbjct: 140 LLQLVFVFCYFIYLFTVYYIY 160


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 460 RILSASGQLIVST*FNFFCFVYQGLNINDLIINSTIQNNYALQV 591
           R+LS +GQ I    F F     QG   + + +N+ +     LQ+
Sbjct: 317 RLLSRNGQFIYLRTFGFLEIDDQGTVESFVCVNTLVSEQEGLQL 360


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 205 HNFDSFGLLLF-VRLFSNPIRSNTITSEFIKFIFKL 309
           +N   F  ++F +    NPI  N I+S+F    FKL
Sbjct: 332 YNILYFSRIMFHINSAVNPILYNIISSKFRSGFFKL 367


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 159 SFFLNYILHYSCSQNA-QL*FLWLII 233
           SFFLN++LH  C+    +  + W+++
Sbjct: 147 SFFLNFMLH--CNNTTWRCLYRWIVL 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,819
Number of Sequences: 336
Number of extensions: 2579
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)