Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1050
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   2.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   4.8  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.3  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   8.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.3  

>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 383 LSINEAFKKH*KKKNRYAHQKCNYVNLKINFINSL 279
           LS  E+  K+   + + A QKC+ +  KINF N L
Sbjct: 843 LSSMESINKNQANELKLAKQKCSNLQEKINFGNKL 877


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 42  CIFCLFIIYSICYQNVHKLNYNYMLLKIFLNISL*KYRY 158
           C FC +I+  + +    K+N     L+IF  I+L  + Y
Sbjct: 217 CDFCSYILMGLAWTCWPKVNIILQFLRIFGGIALIVFNY 255


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 205 HNFDSFGLLLFVRLFSNPIRSNTITSEFIKFIFK 306
           ++F  FG L + +L  +P    ++   FIKF ++
Sbjct: 295 NHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYE 328


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 221 LAYYYLSDCSAIRSDRIQLRAN 286
           + +Y++   SA + DR+ LR+N
Sbjct: 168 IPFYFIPSISAAQKDRVHLRSN 189


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 216 IKVVHFDYNYSVEYNLKKNCTYI 148
           +KVV+ DY   V Y+ K N  Y+
Sbjct: 317 VKVVNQDYEVKVFYHYKDNIKYV 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,543
Number of Sequences: 5004
Number of extensions: 39726
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)